Ipomoea nil (Japanese morning glory): 109170469
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Entry
109170469 CDS
T04663
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 29
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ini03009
]
109170469
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109170469
Ribosome biogenesis [BR:
ini03009
]
Eukaryotic type
Pre-60S particles
Helicases
109170469
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
109170469
NCBI-ProteinID:
XP_019175138
LinkDB
All DBs
Position
Un
AA seq
792 aa
AA seq
DB search
MAKGTGILVSSKAELKRKQKEQKKSKSGGFESMGLSPNVFRGIKRKGYRVPTPIQRKTMP
LILSGNDVVAMARTGSGKTAAFLLPMLEKLQQHVPQAGTRALILSPTRDLALQTLKFTKE
LGRFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDFSLRSVEYVVFD
EADCLFSMGFAEQLHTVLTHLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKI
SPDLKLTFFTLRQEEKHAAILYLIRELIRSDEQTLIFVATQYHLEFLSILLRDEGIESSV
CYGKMDQDARNIHISKFRARKTMLLIVTDVAARGIDIPLLDNVINFDFPCKPKLFIHRVG
RVARAGRTGTAYSFVTPEDMPYLLDLHLFLSKPIRAAPTEEEVLRDIDGVMSRMEQATAN
GETIYGRFPQTALDLLSDRVREIIESSAELISLQKPCKNSFRIYSKTKAKPSRESVKRVK
DLPREGLHLLFKNLLGGNELTALAFSERLKTFRPKQTILEAEGEAAKSKHQGSQWVDVMK
MKRAIHEEVINKVRHQRYSGDHVSKDDTEECISAQVKEKPVSGSKRKAKSFKDDEYFISA
VPTNQHFEAGLSVKANQGFESNRLDAAVLDLVADDKEGLHRQKTTYHWDKRSKKYIKLNN
GDRVTASGKIKTEGGAKVKANKTGIYKKWKEQSHKKVSLKGTNMDDSIGESTSSAGKGGL
GVKGGNMKFQRGRKNTRSIPNAHVRSEIKDHEQIRKEREKKANRIAHLKSKPSKGKKFKR
SSNKGGKGRRSN
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggggactggaattctggtgagctcgaaagcagagcttaagcggaagcagaag
gagcagaagaaatccaagtctggaggtttcgaatcgatggggctcagccccaatgtcttc
agaggaattaagcgtaagggctacagagtccccaccccaattcagcggaagaccatgccg
ctcatcctttccggcaacgacgtcgtcgccatggctcggactggctccggaaaaaccgct
gcatttctgctccccatgctcgaaaagctccagcaacacgtgccccaggctggaactaga
gctctcatactctctcccacccgagatttggctcttcagaccctcaagttcaccaaagag
cttggtcgcttcacagatctccgtgttagcttattagttggtggtgatagtatggaaagc
caatttgaagaattggcacaaagtccagatattataattgcaactcctggtcggcttatg
catcatttatcagaggtagatgatttttccctgcgctctgtggaatatgtagtgtttgat
gaagcagattgtctatttagcatggggtttgctgagcaattgcacacagttctcacccat
ctaagtgagaatcgccaaactttgcttttcagtgcaactttaccaagtgcccttgctgag
tttgccaaggctggtcttcgagaccctcagctagtacgccttgatttggagactaagata
agtcctgacttgaagctaacctttttcactctaagacaggaagagaaacatgctgccatt
ttatacctgattagagaactaattagatctgatgagcagacattaatttttgttgccacc
cagtatcacttggagttccttagcattcttttgagagatgaaggtattgagtcttctgtt
tgttatggaaaaatggatcaagatgcccgtaacatccatatttcaaagttcagagcaaga
aagacaatgctgcttattgttaccgatgtcgcggccaggggaatcgatatcccattgctt
gataatgttatcaactttgatttcccttgcaaacctaaactctttatccatcgagttgga
cgagttgcaagggctggtcgtactggtactgcctattcttttgtcactcctgaagacatg
ccttacttattagatcttcacctctttctctcaaaaccaattagggctgctcctactgag
gaagaggttttacgggatattgatggagttatgtctagaatggaacaagccactgcaaat
ggagaaaccatctatgggcggtttccccaaacggctttagatctcctctcagacagagtt
cgagagattattgaatcatctgctgagctgatctctcttcaaaaaccatgcaagaattca
tttaggatatattcaaagacaaaagcaaaaccttctagggaatctgtcaaaagagtaaaa
gatctgcctcgtgaagggttgcatctgcttttcaaaaatcttttgggtggtaatgagtta
acagcattagccttttctgaacgtctgaaaaccttcagaccgaaacaaaccatcctggaa
gctgaaggtgaagctgctaagtcaaaacatcaaggcagtcagtgggttgatgtgatgaag
atgaaaagagctatccatgaggaggtcataaataaagtgcgccatcagcgctacagtggc
gatcatgtgtctaaggatgacactgaagaatgcatttctgcccaagtcaaggagaaacca
gtttctggatctaaaagaaaggctaagagcttcaaagatgatgagtacttcataagcgct
gtaccaacaaatcagcattttgaggctggactttctgtgaaagctaaccaaggatttgaa
tccaataggttggatgctgctgttctagatttagtagctgatgataaagaagggctgcat
agacaaaaaactacgtatcactgggacaagaggagcaaaaagtacatcaagctgaataat
ggggatcgtgtgactgctagtgggaagataaagacagagggcggtgcaaaggtgaaagct
aataaaactgggatatacaaaaaatggaaagaacagtcacacaagaaagtgtccctcaaa
ggaaccaacatggatgatagtattggagaatcaacaagttcagctggtaaaggtggtttg
ggagttaaaggtggcaatatgaaattccaacgtggaaggaagaatactagatcaataccc
aatgcccacgtacgttcagaaattaaagaccacgaacaaattcgaaaagagagggagaag
aaggcaaacagaatagctcatttgaagagtaagcccagcaagggaaaaaaattcaaaaga
agcagcaacaaaggggggaagggaaggcgaagtaactga
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