Ipomoea nil (Japanese morning glory): 109171623
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Entry
109171623 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109171623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109171623
03036 Chromosome and associated proteins [BR:
ini03036
]
109171623
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109171623
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109171623
mRNA degradation factors
5'-3' decay
Decapping complex
109171623
Chromosome and associated proteins [BR:
ini03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109171623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
Cas3-like_C_2
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109171623
NCBI-ProteinID:
XP_019176223
LinkDB
All DBs
Position
Un
AA seq
488 aa
AA seq
DB search
MNYRARYPPPGMSSGGRGGAGLNPNANPDFKPRNPHQYVQRSPLPNQQHFQNQQTQQWLR
RNNELGADFTADEVEKTVQSEGIDASSQNWKAQLNIPPPDTRYRTEDVTATKGNEFEDYF
LKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDIDI
NSIQVIILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDILRLYQPVHLLVGTP
GRILDLSKKGVCMLKDCSMLVLDEADKLLAPEFQPSVEQLIRFLPLNRQVLMFSATFPVT
VKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS
VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV
NVVINFDFPKNSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPH
IDQTIYCR
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaattatagagcaagatatccgccgcctgggatgagcagcggcggaagaggaggtgcc
ggcctgaaccctaacgcaaaccctgattttaagcctagaaatcctcatcagtacgtccag
cgaagtccacttccaaatcaacagcatttccagaaccagcaaacccagcagtggctcaga
cggaacaacgagttgggtgctgattttaccgccgacgaggttgaaaagaccgtgcaatct
gaaggaattgatgcaagttcgcaaaattggaaggcgcagttgaatatacctccaccagat
acacggtacagaactgaggacgtgacagcaactaaggggaatgaatttgaagactacttt
ttgaaacgtgaactgctcatggggatttatgagaaggggtttgagaaaccgtcgccaata
caggaggaaagtattccaattgccctaactggaagtgatattcttgctagagctaagaat
ggaactggaaaaacggctgccttctgcattcctgccttagaaaaaattgatattgacatc
aactctattcaagttattatccttgttccaacacgagaattggctcttcagacatctcaa
gtttgtaaagaacttgggaagcacttgaaaatccaagtcatggttacaactggtggaact
agcttaaaagatgatattttgcgtctatatcaaccagttcatttattggtgggaactcct
ggaagaatactagacctttcaaagaaaggtgtttgcatgttaaaagattgctcaatgctt
gtgttggatgaggctgacaagctactagctccagaattccaaccatcagtggagcaacta
atacgttttttgcctctaaatcgtcaagttttgatgttttcagctacattcccggttact
gtgaaagattttaaagatagatatttgcataagccatatgtcatcaatctgatggatgag
cttactcttaagggcattacacagtattatgcttttgttgaagaaaggcagaaagtgcat
tgcctgaacacactcttctccaagctacaaatcaaccaatcaattattttctgcaattct
gtaaatcgtgttgaacttctagccaagaagatcacagagcttggctattcttgcttttac
attcatgcaaagatgcttcaagaccaccgaaatagagtatttcatgacttccgcaatggt
gcctgtaggaatcttgtttgtactgatctgtttacaagagggatagatattcaagcagtc
aatgttgttattaattttgatttcccaaagaattcagaaacatatctacacagggttgga
cgatctgggagatacggtcaccttggcctggctgtaaacctgataacttatgaggaccgc
ttcaatctgtatagaattgagcaagaacttggaactgagatcaagcaaattcctccacat
atagatcagactatatactgccgatga
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