Ipomoea nil (Japanese morning glory): 109171901 Help Entry 109171901         CDS       T04663                                  Name (RefSeq) THO complex subunit 2   KO K12879   THO complex subunit 2 Organism ini  Ipomoea nil (Japanese morning glory) Pathway ini03013   Nucleocytoplasmic transport ini03040   Spliceosome Brite KEGG Orthology (KO) [BR:ini00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     109171901   09122 Translation    03013 Nucleocytoplasmic transport     109171901  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ini03019]     109171901    03041 Spliceosome [BR:ini03041]     109171901 Messenger RNA biogenesis [BR:ini03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      109171901 Spliceosome [BR:ini03041]  Complex C   Other components    EJC/TREX     109171901  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     109171901 SSDB OrthologParalogGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 TPR_MLP1_2 ABPF_N LIM_bind Motif Other DBs NCBI-GeneID:  109171901 NCBI-ProteinID:  XP_019176534 LinkDB All DBs Position Un AA seq 1832 aa AA seqDB search MSLPPVECIYITEDSIKEFKNGNSSFKFPNPVPTLRFLYELCWTMVRGELPFQKCKAALE SAEFMDDVCQDEIGSNLADIVTQIAQDLTLPGEYRARLIKLAKWLMESGLVPLRFFQERC EEEFLWEAEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQIPEAS SQNISDATVGIIKSLIGHFDLDPNRVFDIVLEFFEFQPDNSVYLDLIPIFPKSHASQILG HKFQYYQRIEVNDPVPSGLYQLTALLVKKDFIDVESIYVHLLPKDEEAFEHYSASSAKRL EEANKIGRINLAATGKDLMDDEKQGDVTVDLYAALDMESDAVTDRSSELQDSQPLGLLMG FLAVDDWYHARMLFDRLSPLNPVEHMQICSGLFRLIERSISPGYDLICKSQLLRLPTGGS TNTLDVTDSSGSRPFIDLPTQLFEMLACVGPYLYRDASLLQKVCRVLRGYYICALELVNS SGDLNSQLTTGGNQTPRIHLKDARLRIEGALGACLLPSLQLIPANPAVGQEIWELLSLLP YEVRYRLYGEWEKDDDQLPMVFAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPM TVLRTIIHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQSGRDKLKDDGLNLSD WLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKRGNGIELVFLQELIQQMANVQYTENMT EEQLDAMAGSDTLRYQATSFGITRNNKALIKSTNRLRDALLPKEEPKLAIPLLLLVAQHR SVVVISADVPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPAAGYALLVPTLDELVRLYHLD PEVAFLIYRPVMRLFRSQNNPDAFWPLDYDEAMSAVTAGKESENMDDCAKMVLDLGSSRK PIFWEDLLDTIRTMLPSKAWNSLSPDLYATFWGLALYDLYVPRNRYESEIAKQHAALKAL EELSDNSSSAITKRKKDKERIQESLDRLTTELHKHEEHVASVRRRLSREKDKWLSSCPDT LKINMEFLQRCIFPRCTFSMPDAVYCAMFVNTLHSLGTPFFNTVNHIDVLICKTLQPMIC CCTEYEAGRLGRFLYETLKTAYYWKSDEAIYERECGNMPGFAVYYRYPNSQRVTYSQFIK VHWKWSQRITRLLIQCLESTEYMEIRNALILLTKISNVFPVTRKSGINLEKRVGKIKSDE REDLKVLATGVGAALAARKPSWVSDEEFGMGFLELKPAPGPTQKSSAANQSAIQNGAIIH ASQGESAGGRTAAVGRAGDGKSERTESASLKPDLGHSKQNAASSNGPDSSSSRPSAVQSG ASRSMENQKHMDDSTNEPLEESNTKTVTKTFSNQEGRAATKRAVPSGSQTKLKQDLAKDD RSGKVVHPSDNRSGGVTSSIPGNGNMGLAKTATSSARSLTHGNETKTDPRHTTGKDDVNE SSDVHNQSSSRGVHSPHQEFSKSSDRKRASPTEEVDRLNKRRKGEIDPREIDGGEVRERT IDSRAVDKLHPPDYDKTGSEDQNTNRQTEKPIDRSKEKGAERHEREHRERPDKSRGDDVL SEKQRDRSTERHVRERSVEKVLERGADRNFDRLGKDERSKDDRSKSRYGEVPVEKSHVDD RFHNQSLPPPPPLPPHVVPQSINTGKRDEDSDRRVGSARHGQRLSPRHEERERRRSEENT LLLQDDMKRRRDDDFRDRKREERDGLQIKVEEREREREKPNLLKEDMDPNAASKRRKLKR EHAPSESGEYSPAALPPPPLPVNVSQSYDGRERGDRKTGMVQRPGYLEEQGPRIHGKETT SKSNRRDVDPMYDREWDDDKRQRAEPKRRHRK NT seq 5499 nt NT seq  +upstreamnt  +downstreamnt atgtctctcccacctgtggagtgcatttacataactgaagactccataaaggaattcaag aatgggaactccagcttcaaattccctaatcctgtgccaaccctccgctttctctacgag ctctgctggactatggttagaggagagttgccatttcagaaatgcaaagctgcattggag tctgcagaatttatggatgatgtctgccaggacgaaataggatccaacttagctgatatt gttacccaaatagctcaagacctcactttgcccggagaatatcgtgcacgtcttatcaag ctggcaaaatggctaatggaatctggattggtacctttaagattttttcaggagcgatgt gaggaagaattcctgtgggaagcggaaatgatcaagataaaggctgctgatttgaagtca aaagaggtcagggtaaacactcgccttctttatcagcaaacaaagtttaaccttcttcga gaagagagtgaaggctatgccaaactggttactctactttgccagattcctgaagcttct agccaaaatatatcggacgcaacagttggtataatcaagtcattaattggacattttgat cttgatccgaaccgagtctttgacattgttttggagttttttgaatttcaacctgataat agtgtatatctggacctcatccctatatttccaaagtctcatgcctctcaaatccttggt cataaatttcaatactaccagcgtatagaagtaaatgatcctgtgccaagtggtctgtat cagcttaccgccttgctggtgaaaaaagacttcattgatgttgaaagcatatatgtgcat ttacttcccaaggatgaggaggcatttgagcattatagtgcatcctctgctaagagactt gaggaggcaaacaaaataggaagaataaatcttgctgctactggaaaggatctcatggat gatgagaaacaaggtgatgtaacggttgatctttatgctgccttggatatggaatcagat gcagtcactgatagatcctcagaactacaagatagtcagcctttgggcctactcatgggg tttcttgctgtggatgattggtatcatgctcgtatgttatttgatcgtctctcacctctt aatccagtggagcatatgcaaatatgcagtggtttgtttaggcttattgaaagatcaatt tcaccggggtatgacctaatttgcaaaagtcagcttctgcggttgcctactggaggtagt actaacacattggatgtgactgattcatctggcagtagacctttcattgatcttccaaca cagctttttgagatgcttgcttgtgtgggtccttatctatatcgagacgcttcattactg cagaaggtttgcagagtattgaggggttactacatttgtgcactggaacttgtcaacagc agtggagatctcaattctcaattgaccactggtggaaaccaaactcctcgcatccactta aaggatgctaggctaagaattgagggagcactaggagcatgtctacttccttctttacag ctgataccggcaaatcctgcagttgggcaagagatatgggaacttctgagcctcctacca tatgaggtacgttatcgtctatatggtgaatgggagaaagatgatgatcaacttccaatg gtttttgctgcaaggcaaacagctaagttggatacaagaaggattctaaaacgccttgct aaagaaaatcttaaacaacttgggcgaatggttgcaaaactagctcatgccaatccaatg acagtgcttaggacaataattcaccagatagaggcttatagggatatgattacccctgtt gttgatgcatttaagtacttgacacagctggagtatgatattttggaatatgttgtaatt gagcgcctggcgcaaagtgggcgtgataagctaaaagatgatggccttaatttgtcggat tggctccagtctttggcatcgttttggggacatctgtgtaaaaaatatccatcaatggaa ctaaggggtcttttccagtatcttgtaaatcagttgaagagaggaaatgggattgagctt gttttcctgcaggaacttatacagcaaatggctaatgtacaatacacagagaacatgacg gaggagcagctggatgcaatggcaggaagtgacaccctacggtatcaggccacttcattt ggaataaccaggaacaataaggcattgatcaaatccactaaccggctaagagatgctttg cttccaaaagaagaaccaaagttggcaattcctcttctattactcgttgctcagcaccgt tctgtggttgtcataagtgcagatgttccttacatcaaaatggtcagtgaacaatttgat agatgccatggaactctcctccaatatgtggaatttttgtctagtgcagtgactccagca gctggctatgctctacttgttccaacattagatgaacttgtacgcctctatcatcttgat ccggaggttgcatttttaatttatcggccagttatgagactctttcgttctcagaacaat ccagatgccttttggccattggactatgatgaagcaatgagtgctgtaacggctggaaag gaatctgaaaacatggatgattgtgccaaaatggttctggatcttggctcttctcgcaag cctatcttttgggaagacctccttgatacaatcaggacaatgttaccttcaaaagcatgg aatagcttgtctcctgacctgtatgctaccttttggggtcttgctctgtatgatctctat gttcctagaaaccgttatgagtctgagattgctaagcaacatgctgctcttaaggcactt gaagagctgtctgataattctagttctgcaatcactaagaggaagaaagacaaagaaaga attcaagagtctctagaccgactaacgacagaactccataaacatgaagaacatgtagca tctgttcgtagacgtctatctcgcgaaaaggacaagtggttgagttcatgccctgataca ttaaaaatcaatatggaatttctacagcgctgcatttttccacgctgtacattcagtatg cctgatgcagtgtattgtgctatgttcgtaaacactcttcattcacttggaactcctttt tttaacactgtaaaccacatagatgttttgatatgcaaaacgttacaacccatgatttgt tgttgcaccgagtatgaagcgggtcgtctaggaaggttcctgtatgagactttgaagaca gcttattattggaagagtgatgaagcaatatatgaacgtgaatgtgggaacatgccaggg tttgctgtttattacagatatccaaacagccagcgtgtcacgtacagccaattcattaag gtacactggaaatggagccaaaggatcacaaggttgctgatacaatgtttggagtcaact gagtacatggaaattcggaatgctctaattttgctgacaaaaatatccaatgtcttccca gtcacccgtaagagtgggattaatcttgaaaagcgggttggtaaaattaaaagtgatgaa agagaggatctcaaggtattggcaactggtgttggtgcagctttagctgctaggaagcct tcatgggtttcagatgaagaatttggcatgggttttcttgaactgaaacctgcaccagga ccaactcaaaagtcatcagctgcaaaccaatctgccatacaaaatggggccatcatccat gcctctcagggtgagtctgctgggggtagaactgctgctgtgggaagagcgggtgatggg aaatcagaaagaacagagagtgcttcactaaaacctgatctggggcattcaaaacaaaat gctgcctcttctaatggccccgatagctcatcttcaaggccatctgctgtgcaatcgggt gcatccaggtctatggagaatcaaaaacacatggatgattcgacaaatgaacccctagaa gaaagcaacactaaaacagttaccaagacattttccaaccaggagggaagagctgctaca aagcgtgctgttccatctggatctcaaactaagctaaaacaggaccttgccaaagatgat agatctggaaaagttgttcatccatctgacaataggtcaggcggagttacttcttcaatt ccaggcaatggtaacatgggtttagcaaaaactgcaacctcatctgcacgatctctaact catggaaatgaaacaaaaactgatccgagacacactactgggaaagatgatgtgaatgaa tcttctgatgtgcataaccaatcttcttctcgaggggtgcattctcctcatcaggaattt tctaaatcttctgatagaaagagagcaagtcctacggaagaagtagatagactaaataaa cggcgtaaaggcgagattgatccaagggaaatagatggtggtgaggtaagagaacggaca atcgatagtcgagctgttgataaacttcatccaccagattatgataaaacgggatctgaa gaccaaaatacaaacagacagacagaaaagcctattgatagatcaaaagaaaagggtgct gaaagacatgagagggaacatcgggagcgtcccgacaagtcccgtggggatgatgtgctt tctgaaaaacaaagggatagatcaacagaaagacacgtaagagagcgttcagtagaaaaa gttctagagaggggtgcggataggaactttgataggctaggtaaagatgaaagaagtaaa gatgacagaagcaaatcgagatatggtgaagttcctgtagagaaatctcatgtagatgat cggtttcataatcaaagcctacctccacccccacccttgccacctcatgtggtccctcaa tccattaatactggtaagagagatgaagattctgatagacgcgttggatctgcaaggcat ggccaaaggctttctcctaggcatgaagagagagagaggaggcgatccgaagagaatact ttgctacttcaggatgatatgaaacgtagaagagatgacgattttcgagatagaaagcgg gaagaaagagatgggcttcaaataaaggtggaggagagggagagagaaagggaaaaacca aaccttttaaaggaagacatggatcccaatgcagcttccaagaggcggaaattaaaaaga gagcatgcaccatcagaatctggtgagtattcaccagcagctcttcctcctcctcccctt cctgttaatgtctcacagtcctatgatggaagagagaggggagatcgtaaaacaggtatg gttcaacgtcctggttacttggaggagcaaggtccaaggattcatggaaaagagacaact agcaaatcaaaccgtcgtgatgtggatccaatgtatgatagagagtgggatgatgataaa agacaaagagctgagccaaaaaggcgacatcgcaagtaa

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