Ipomoea nil (Japanese morning glory): 109172320
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Entry
109172320 CDS
T04663
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109172320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109172320
03012 Translation factors [BR:
ini03012
]
109172320
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109172320
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109172320
Translation factors [BR:
ini03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109172320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
AAA_16
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
109172320
NCBI-ProteinID:
XP_019177048
LinkDB
All DBs
Position
Un
AA seq
1192 aa
AA seq
DB search
MAYSNLIHNCRRLRPRAIPLMAAATTTSVSLQLYRRFHLNKSPILLRTTRPPHRLHNFGF
CCSAAIIRRRNRNASSPFNLPYIYQQNFGFGRLAYPEYPSESESDREFEPESKQLDDSTL
GNIEEWRWKLTMLLRNENEQEVISREKKDRRDFGHLSTLATRMGLHCCQFDKVVVFSKVP
LPNYRPDLDAKRPQREVVIPHGLQDRVNALLKAYCSKKSINNTSSEYNYFSRSSNGQKFS
NDNELCENEKPPSRNIVAERILQRRSLDMQYKQQNWQESLEGQKMIEFRRSLPAYKERES
LLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRISAMAVSER
VAAERGENLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLEGVTHVIVDEIHE
RGMNEDFLLIVLKDLLHRRPELRLILMSATLNAELFSSYFGGAPRIHIPGFTYPVRSHFL
ENILEMTGYRLTPYNQIDNYGQDKMWKMQKQTLRKRKTQIASAVEDALETASFREYSPRT
RESLSCWNPDSIGFNLIEHVLCHICRRERPGAVLVFMTGWDDINALKDQLQANPLLGDSS
RVLLLACHGSMASTEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVLDCGKAKETSY
DALNNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVHDTFAEYQMPELLRTPLQ
SLCLQIKSLQLGSISEFLSKALQPPESLSVQNAIEYLKMIGAFDEDENLTLLGRNLSMLP
VEPKLGKMLILGSIFNCLDPIMTIVAGLSLRDPFLMPFDKKDLAESAKAQFSARDFSDHL
TLFRAYEGWKDAERNQSGYEYCWKNFLSPQTLKAIDSLRKQFFHLLKDSGLVDSGESCNI
WSHDEHLVRAIVCAGLFPGICSVVNKEKSISLKTMEDGAVLLYSNSVNGLEPRIPYPWLV
FNEKVKVNAVFLRDSTAVSDSMVILFGGNITRDSAHGHLKMLGGYLEFFMNPTLATTYVR
LKKELYELIHEKLLNPKLNLGNHDELISAVRMLVSEDQCEGRFVFGRQIPSSAIKSRKDA
EAGMVSSKGSGGDNPKSHLQTLLVRAGHQSPSYKITQLKNNKFRAVVMFNGLDFVGQPCG
SKKEAEKAAASEALQWLTGETTETQSSQKTVEHMSAILKKSKKKQLSASRWR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggcctactctaaccttatacacaattgccgcagattaaggccaagggccattccactt
atggccgccgccaccactacctccgtctctcttcagctctaccgccgcttccatttaaac
aaatcccctattcttctccgtaccacaaggccaccccaccgcttgcataacttcggcttc
tgttgctctgcagccatcatacgtaggcggaacaggaatgcgtcctctcctttcaatttg
ccgtatatttatcagcagaatttcgggtttggccggcttgcgtaccccgagtacccttca
gagtctgagtctgatcgggaatttgagcccgagtctaagcagttggatgattcaactctt
ggtaatattgaagagtggagatggaagttaaccatgctattgcgtaatgaaaatgaacaa
gaagtgatctcaagagagaaaaaggatcgtcgtgattttgggcatctatcaacactagca
accagaatgggtttacattgttgtcaatttgataaagtagttgtctttagtaaagttcca
ttaccaaactacagaccagatctggatgctaagcgtccacagagggaggtggtcatacct
catggactgcaagatcgtgtaaatgcccttctgaaagcatactgttctaaaaagtctatc
aataacacaagctcagaatataattacttttcaagatctagcaatggccagaaattttca
aatgacaatgaactttgtgagaatgagaagcccccttcacgaaatatcgttgctgagaga
atccttcagcggaggagcttggacatgcaatataaacaacaaaattggcaggagtctcta
gaaggtcaaaagatgatagaatttcgaaggagtcttcctgcatataaagagagggaatca
ttattaaatgcgatttctcagaatcaggtcgtggtcgtgtctggtgaaactggatgtggt
aaaaccacacaactgcctcaatatatcttagaatccgagattgaagctgctcgtggagct
acctgcagtattatttgtactcaacctcggcgaatatctgctatggcagtttcagaaaga
gttgctgcagagcggggtgagaatttgggagaatctgttggttataaagttcggcttgag
gggatgaaagggagggatacacgtcttctgttttgcactactggaatccttttaaggaga
ttgcttgttgatcggaatttagagggtgttacccatgttattgttgatgagattcatgaa
cgtggaatgaatgaagatttccttttaattgttctcaaagacctccttcatcgccggcca
gaattgaggttgattttgatgagtgcaacacttaatgctgagcttttctcctcatatttt
ggtggtgctcctaggattcacattcctggttttacttatccagttcggagtcatttccta
gagaatattttggaaatgactgggtatcgattgactccatataatcagattgataattat
ggtcaagataagatgtggaaaatgcagaaacaaactcttaggaagaggaaaacacaaatt
gcttcagctgtagaggatgcacttgaaactgcaagttttagggagtatagtcctaggact
cgggaatcattatcgtgctggaatccagattcaattggctttaacctcattgagcatgtt
ctttgccatatatgtagaagagaaaggcctggagctgttttggtatttatgaccggttgg
gatgacataaatgctctaaaggatcagctccaagcgaatccactattgggagattccagt
agagttttgttgcttgcttgtcatggttctatggccagcacagagcagagacttattttt
gataagcctgaagatggagtgaggaagatagtgctagccaccaatatggctgaaacaagc
atcaccataaatgatgtagtctttgtgctagactgtggaaaggcaaaagagacatcttat
gacgcactcaataacactccatgtttgcttccttcttggatttcaaaagcttctgctcgg
caaagaaaaggaagggctggtcgtgttcaacctggggagtgctatcatctctatcctaga
tgtgtgcatgatacttttgcagaatatcaaatgccagagcttttgagaacgccacttcag
tctttatgtctgcaaattaaaagtttacaacttggaagtatttcagaatttctgtctaag
gctttgcagccaccagaatctttatctgttcaaaatgccattgagtatttgaagatgatt
ggtgcctttgatgaagatgaaaatcttacacttcttggacgcaacttgtcaatgcttcca
gttgaaccaaaacttggaaaaatgctcatactaggttcaatttttaactgccttgatcct
ataatgactattgttgctggcctaagtttacgagatccattcttgatgccatttgacaag
aaagatcttgcggaatcagcaaaagcccagttttctgctcgtgacttcagtgaccacctc
actcttttccgcgcttatgaaggttggaaagatgctgagaggaaccaatctggttatgaa
tactgttggaagaattttctttctccacaaactctaaaagctattgattcccttaggaag
caatttttccaccttcttaaggactctggcttagtagatagtggggaaagttgcaatata
tggagccatgatgaacatcttgttcgagcaattgtctgtgcgggtctatttcctggaata
tgctcggttgtgaacaaggagaagtcaatatcattgaaaacaatggaggatggagcagtt
ctcttgtactcgaactctgtgaatggcctagaacctagaattccatacccgtggcttgtg
ttcaatgaaaaagtgaaagttaatgcagtcttcctccgtgattctacagctgtttcagat
tctatggttatcttatttgggggaaatattacgagagacagtgctcacgggcacttaaaa
atgctgggaggatacttggagtttttcatgaatcccactctagcaaccacatatgtaagg
ttgaagaaggaactttatgaactaatccatgaaaagcttctgaatcctaagttaaaccta
ggaaatcatgatgagctcatatcagcagtaagaatgctggtttcagaggatcaatgtgaa
ggtcgatttgtgtttgggcgtcagataccatcatctgccatcaagtctagaaaagatgca
gaagcaggcatggtctcgagtaagggtagtggcggtgataatccaaagtctcatctccaa
acgctgcttgtccgagccggacatcaatctcccagttacaagattacacaactaaaaaac
aataaattccgagctgttgtaatgttcaatgggttggattttgttgggcagccttgcggt
agtaagaaagaagcagaaaaggctgctgcctccgaagctttgcagtggttgactggtgag
accactgagacccagtcttcccagaagactgttgaacacatgtctgcaattctaaagaaa
agcaaaaagaaacaactttctgcttcaaggtggaggtga
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