Ipomoea nil (Japanese morning glory): 109172613
Help
Entry
109172613 CDS
T04663
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109172613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109172613
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109172613
Spliceosome [BR:
ini03041
]
Complex C
Other components
Step II factors
109172613
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11_1st
KH_DEAH11
Helicase_C
DEAD
IBR
OB_NTP_bind
AAA_22
IBR_1
AAA_19
HA2_N
ResIII
zf-C3HC4_2
AAA_29
Helicase_RecD
RsgA_GTPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109172613
NCBI-ProteinID:
XP_019177351
LinkDB
All DBs
Position
Un
AA seq
1740 aa
AA seq
DB search
MQRPGFSDTFRRNRPPEKLPYTEAGHCYRPRQPYKNQWKSHLSDRRDRSPGPPKFVIQFR
SSSRSLKRSEFNELIEKLPSPPQSSHVFERGCVLGTLFYEQWSEAVEVVVELWRIRLDGG
LPMTPSLVENAEVSSKKEELKDRLRGVFLEKLEGVMEGEVVQKCRQKLKLLEAEIEKVSK
LLGKPKRIALANELLNKKEGFVAERDLVAKRIAEFMNGVSCIVLYLEGKYSGEDVHGDST
AVFTFETEFNWDRIHHLIKRECRRLEDGLPIFASREEILKQIVSEQATVLIGETGSGKST
QLVQFLADSGVAGNGAVVCTQPRKLAAISLADRVKEECIGCYQENSIACYPSYSSSHQFD
SKVIFMTDHCLLQHYMRDKSLCKISCIIIDEAHERSLNTDLLLALLRNLLHQRHDLRLII
MSATADADQLTNYFFGCRTFYVSGRTFPVDIKYVPSECEGSFVSGSGTVPSYVSDVVRTV
TGIHKTEGEGTILAFLTSQMEVEWAIETFQAPSAIALPLHGKLSYEDQRRVFLNFPGKRK
VIFTTNVAETSLTIPGVKYVVDSGRVKESRFEPGTGMNVLKVCPVSKSSANQRAGRAGRT
EPGRCYRIYSENDFENMPCHQEPEIRKVHLGIAVLRILALGIKDVQSFDFVDAPSPIAIE
MAIRNLIHLGAIACNDDGYELTADGHYLVKLGIEPRLGKIILSCFHRHLGKEGLVLAAVM
ANSNSIFCRVGTEVDKLKSDCLKVQFSHPDGDLFTLLSVYKEWDAVSQEKKSAWCWNNSI
NAKTMRRCQETVEELEACLQNELSIVVPTYWHWDPHMHTEHDESLKHIILSSLSENVAMF
SGYDQLGYEVALAGKHVKLHPSCSLLNFCQRPTWVVFGDILASAKEYLVCVTAFDFHNLA
TLFPPPLFDFLKMDAQKLQKKSLTGFGSMLLKRLCGKSNCHINRFVSRMRTLCMDERIGI
EVNVDQNEIAMYASSRDMDRVFENLNEAVDYEYKLLKNECLEKCLYNGGSASSVPTALFG
AGAEIKHLELEKRCLTFDVFLSKGNSFDDKELLMFLERNAGDICVVHRFSGVGQDSGEME
RWGRVTFVTPNAAEHASALNSVPLSSGVVKVVPSKTMHDGDQNMNSSHLLKAKVHWPRRF
SKGVAIVKCHPKDIAFMVDDFSSVVIGRSIVRCEQSIKCSDSIVIKGLDRELSEAEIFEM
LTPLTGRNILDLFLIRGNAVEGPPLVACEEALRREISSFMPKRNPYGNSTRVQVFPPEPK
DTYIKAAITFDGSLYLEAARALEEMNGKVLPGCLPWQKIQCQHLFSSSVSCPAAVYHVIK
TQLDTLLASFRHRKGVECNLLRNENGSYRVTISAGATKIVAEVRKLLEQLMKGKIIDHDG
ITPTVLQHLFSREGIFLMKSVQQETGTYILFDRHTHTLRIFGCSNMIDMAEKKFVDLLLS
LHENKQLEVHLRGEALPPNLMKRVVQKFGADLNGIKQMFPEGNFSLNVKHHCISISGPKE
VKQKVEDVIYEMAQTSSPQNLRSDDEADCPICLCEVEEGFKLENCFHVFCRSCLVEQCES
AIRSREGFPMCCMHKGCKAPILVADLKSLLSIEKLEELFRASLGAFVAASGGSYRFCPSP
DCPSVYRAADPSATTGEPFICGACYAETCTSCHLEYHPFISCGKYREIKDDPDYNSLKAW
KKGKENVKNCPVCSFTIEKVDGCNHIECKCGKHVCWVCLDFFATSDDCYNHLRSVHSTII
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaccagggttttcagacactttccggcgaaatcggccaccggagaagcttcct
tatacggaagcgggtcactgttaccgcccgcggcagccgtataagaatcagtggaagtct
cacttgagcgaccgtcgtgatcggtctcctgggccgccgaaattcgttatacagttccgt
tcgagtagccggagcctgaagagatccgaattcaacgagctcatcgagaaattgccgtcg
ccaccgcaaagttctcatgttttcgaaaggggttgtgttttagggactctgttttatgag
cagtggagtgaggctgtggaggtggtggtggagttatggagaatccggctcgacggaggg
cttccgatgacaccgtcgctggtggagaacgcggaggtgtcgtcgaagaaggaggaattg
aaggatcggctccgaggggtgtttctggagaagctcgagggggtaatggaaggggaagta
gtgcaaaagtgtaggcagaagttaaaattgctggaggcggagattgaaaaggtctccaaa
ttgcttggaaagccgaaacgtatcgctcttgcaaatgaactattgaataaaaaggagggt
tttgtggctgagagggacttggtagcaaagaggatagcggagttcatgaatggggtgagt
tgtattgtgctttatttggaggggaaatactccggggaggatgttcatggagacagtacg
gcagtgtttacctttgagacagagttcaattgggaccgcattcatcatctgattaagagg
gaatgccgaagactcgaggatggcttgcccattttcgcttcaagggaagagattcttaag
caaatagtttctgaacaggctacagttttgattggggagactgggtctggaaagagtaca
caattggttcaattcctagctgattcaggagttgctggaaatggtgctgtagtctgcact
caaccccgaaaacttgctgccatctctttggcagatagggttaaagaggaatgtattggc
tgttaccaagaaaactctattgcctgttacccatcatattcatccagtcatcagtttgat
tcaaaggtaatatttatgacagatcactgcctgctgcagcactatatgagagataaaagt
ttgtgtaagatttcatgcattataattgatgaagcacatgaaagaagcttaaacacggat
cttcttttagcattgctaaggaatttgcttcatcagaggcatgatttaaggcttatcatt
atgtctgccacagctgatgcagatcagcttacaaattacttctttggttgtagaacattt
tatgtgtctggcagaacttttccggtggacattaagtatgtacccagtgaatgtgaaggt
agttttgtttctggttctggtacggttccttcttatgtttctgatgttgtaaggactgtg
actggtatccacaaaacagagggagagggaacaattcttgccttcctgacttctcagatg
gaagtagagtgggctattgagacttttcaagccccctctgccattgcattacctttacat
gggaaactctcctatgaagaccaacgccgggttttcctgaatttccctggaaagagaaag
gtaatattcactacgaatgttgctgagacatctttgacaattccaggtgtcaaatatgtt
gttgattctgggagggttaaagaaagcagatttgaacctggaactggcatgaatgttctc
aaggtttgtccagtcagcaaaagctcagcaaatcaacgagctgggcgagctggtagaact
gaaccgggaaggtgttatagaatctactctgaaaatgattttgagaatatgccttgtcat
caggaacctgaaattcgtaaggttcatcttggtattgctgtgctaaggattcttgccctg
ggcatcaaggacgtgcagagttttgattttgttgatgcacctagtcctatagcaattgag
atggctatcagaaatctgattcacttaggagctattgcatgcaatgatgatggttatgaa
ttaactgcagatggacattatctagtgaagttgggtatcgagcctcggttgggtaagata
atccttagttgtttccatcgccatttgggtaaagagggtcttgttcttgctgctgttatg
gcaaattcaaacagcattttctgcagagttggtactgaagtagataaactaaaatctgat
tgccttaaggttcagttttcccatcctgatggtgatctcttcactttactatctgtttac
aaggaatgggatgctgtttctcaagaaaagaaaagtgcctggtgctggaataatagcatc
aatgccaaaaccatgagaaggtgccaggagactgttgaagaactggaagcctgtcttcaa
aatgaactgagtatcgttgttccaacttactggcattgggatccacatatgcacactgag
catgatgaaagtttgaaacacattattctctcttccctttcagaaaatgtggcaatgttc
tctggttatgatcaacttggctatgaggtagcactggcaggtaagcatgtcaaattgcac
ccttcatgttcgttattgaatttttgtcaacgacctacttgggtagtttttggtgatatc
ctggcatcagctaaagagtatctggtctgtgttacggcgtttgactttcacaacctagct
actttgtttcctcctccattgtttgatttcttaaagatggatgctcaaaagctacagaaa
aagtctttgacagggtttggaagcatgctgctgaagagattgtgtggaaaatctaactgt
cacatcaatcgttttgtttcgcgaatgagaactttgtgcatggatgaacgcatcggcatt
gaagtgaatgttgatcagaatgagattgcaatgtatgcttcttccagagacatggatagg
gtttttgagaatctgaatgaagcagtggattatgaatacaagttgttgaaaaatgaatgt
ctggagaaatgtttgtacaatggagggtctgcttcttcagtgcctactgccctttttgga
gctggtgctgagataaaacatttggagcttgagaagagatgtttgacatttgatgtattt
ctttcaaagggaaattcatttgatgataaagaactgttgatgtttctggaaaggaatgca
ggtgacatttgtgtggtccacaggttctcaggtgtgggacaagatagtggggagatggag
agatggggcagggtaacatttgtcacccccaatgctgctgagcatgcttctgcactaaac
tccgtcccacttagcagtggtgtggtcaaagtagttccttccaagaccatgcatgatggt
gatcaaaatatgaactcatctcatttgctcaaagcaaaagtgcattggcctcgcagattc
agtaaaggggtagctattgtgaaatgtcatccaaaggacattgcttttatggttgatgac
ttctctagtgttgtaataggaaggagcattgttcgatgtgaacaaagcatcaaatgttct
gacagtatagtgattaagggacttgatagagagctttctgaagctgagatatttgagatg
ttaactccattgacaggcagaaatattttggatttgttcctaatcagaggaaatgctgta
gaaggtcctccattagttgcttgtgaagaagcacttcgaagagaaatatcttccttcatg
cctaaaaggaacccttatggtaactctactcgtgtccaagtcttccctcctgaaccaaag
gatacatacattaaagcagctataacattcgatggaagtctatatctagaagctgcaagg
gctctggaagaaatgaatgggaaagtattgcctggatgccttccatggcagaagatacaa
tgccagcacttgttttctagttccgtgtcctgtcctgcagcagtatatcatgtcattaag
actcagctggatactttacttgcaagcttccgtcatagaaagggtgttgagtgcaatctc
cttaggaatgagaacggttcctatagagttaccatatctgctggtgccacgaaaattgtg
gcagaagtgagaaaactattggagcagcttatgaaagggaaaataatagaccatgatggc
attactcccacagttctgcaacatttattttctcgggaagggatctttcttatgaagtca
gttcagcaggagacaggaacctatattctttttgacaggcatacccatactctgagaatc
tttggttgttcaaacatgattgatatggcagagaagaaatttgtggatttacttctgtca
cttcacgaaaacaagcaacttgaagtccatcttcgtggagaagctttgcccccaaatctg
atgaagagagtggttcagaagtttggagcagaccttaatgggatcaagcaaatgtttcct
gagggtaacttctctctgaatgtcaaacaccattgtatctctatcagcggtcccaaagaa
gtgaagcaaaaagttgaagacgtaatttatgagatggctcaaacaagtagtccgcagaat
ctaaggagtgatgatgaagctgactgcccgatttgcttgtgtgaggtggaggagggtttc
aagctagaaaactgtttccatgtcttctgccgatcatgcttggtggagcagtgcgagtct
gccatcagaagcagagaaggtttccccatgtgctgtatgcataaaggttgcaaggctccg
atcctggttgctgatttgaagtctctgttatcaatcgaaaaactggaggagcttttcagg
gcatcattaggggctttcgtggcagcaagtggaggttcttacaggttttgcccatccccc
gattgcccctcagtttatcgtgctgctgacccctcggccactaccggggaaccattcatc
tgcggtgcatgttatgcagaaacatgtacgagttgccacctcgagtaccatccgttcatt
tcatgtggcaagtaccgtgagatcaaagacgacccagactacaactctctgaaagcatgg
aaaaagggaaaagagaacgtgaagaactgccccgtctgctcgttcacaatcgagaaggtg
gatggctgcaatcacatcgagtgcaagtgcgggaaacacgtttgctgggtatgtttggat
ttctttgctacgagtgatgattgctataatcatttgaggtctgtacattccaccattata
tga
DBGET
integrated database retrieval system
