Ipomoea nil (Japanese morning glory): 109174283
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Entry
109174283 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03013
Nucleocytoplasmic transport
ini03015
mRNA surveillance pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109174283
09122 Translation
03013 Nucleocytoplasmic transport
109174283
03015 mRNA surveillance pathway
109174283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109174283
03041 Spliceosome [BR:
ini03041
]
109174283
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109174283
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109174283
Spliceosome [BR:
ini03041
]
Complex C
Other components
EJC/TREX
109174283
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109174283
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
109174283
NCBI-ProteinID:
XP_019179072
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MGENKENDAYEEELLDYEEEDEKAPDSVGAKVNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARENNLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSSDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaacaaggagaatgatgcttacgaggaggagcttctcgactacgaggaagag
gacgaaaaagcccccgattccgtcggagctaaagtcaacggcgagtccgttaagaagggt
tatgttggaattcatagttccggtttcagagactttcttctcaagccagagctactgcga
gctattgtggattcagggtttgagcatccctccgaagttcaacatgaatgtattccacaa
gctattctgggtatggatgtaatttgccaagcaaaatctggaatgggcaaaactgcagtt
tttgtcctctcaaccttgcaacagattgaacctgttgctggtcaagttgctgcccttgtt
ctttgtcatacaagggaattggcttaccagatctgtcatgaatttgagaggttcagcaca
tatttgccagatattaaggtggctgttttctatggtggtgtcaatatcaaaattcacaag
gatctactgaagaatgaatgccctcacattgttgttggaacacctggaaggatacttgca
ttagcaagagaaaataatctttctttgagaaatgtgaggcattttatactggatgaatgt
gataagatgcttgaatcacttgacatgaggagagatgtccaagaaattttcaagatgact
cctcacgacaagcaggttatgatgttctctgcaactctcagcaaggagatccgtcctgtt
tgcaagaagtttatgcaagatccaatggaaatttatgtggatgacgaggccaaattaact
cttcatggacttgttcagcactacatcaaattgactgaaatggagaaaaatcggaaactg
aatgacttgcttgatgctctggactttaatcaagttgttatctttgtcaaaagtgtgaat
agggctgctgagctaaacaagttacttgttgaatgtaattttccatcaatctgcatccac
tctggcatgtctcaggaagagagactgacacgttacaagggtttcaaggaggggcacaag
agaattcttgttgctactgatttggttggcaggggcattgatattgaacgggttaacatt
gtcattaactatgacatgcccgactctgctgacacttaccttcacagggtgggtcgagct
ggtcggtttggcactaagggtcttgctataacttttgtttcatcatcatcagattcagat
gtactgaatcaggttcaggaaaggttcgaagttgatatcaaagagctacctgagcagatc
gatacttctacttatatgccatcgtaa
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integrated database retrieval system
