Ipomoea nil (Japanese morning glory): 109174611
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Entry
109174611 CDS
T04663
Name
(RefSeq) protein NRDE2 homolog
KO
K26109
nuclear exosome regulator NRDE2
Organism
ini
Ipomoea nil (Japanese morning glory)
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109174611
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109174611
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Suf
IspA
SR-25
Motif
Other DBs
NCBI-GeneID:
109174611
NCBI-ProteinID:
XP_019179397
LinkDB
All DBs
Position
Un
AA seq
1161 aa
AA seq
DB search
MEKEEDESAQQKQETSEEPKTTSSLFPVSPQFSISAAAGAGAVPEWLRNSSFTTNLSVIN
DSLSAHHRHAPFQYEDKEEEEEEVDKGSNKERAQYELLDSSASDRGPSSSPSDEERDNRR
KRRMKKRKRRRERSADARKPYEHALFSSRKPDVGSWASSSAAAATNDRDYYFDSRGDRDN
LAFGCLYKMDVARYKLHNTRKTFELNYCWRNHNSIFDPDGDVDAFDSKLRAEGRYWSAKY
AAVERHKNLKRTRIFSHARPQLKDSVDFIPLIDEGSGGESVSGATVVEESWEDEIFCKTK
EFNKMTRERPQDEKIWLDFADFQDKVASMQPHKGARLQILEKKISILEKATELNPDSEDL
LLSLMNAYQSRDSIDVLISRWERILLQNSDSYTLWREFLRFVQGEFSRFKVSEMRKIYAN
AVQALSGACSKQHRQVCQGAMPVSLDPAIVKLEVGLVDIFMSLCRFEWQAGYKELATALF
QAEIEYSLFSPSLLLSKNSKQRLFEHFWSSNGARVGEDGALGWSTWLEKEEEQRQRAVEE
SSTNVDEGGWTGWSEPLSKIKEINEVSEKVIDSDGVLEELEDGAEMQEADEKDDTEALLK
MLGIDAAAAEVNGEVKDTRTWARWSEEEVERDSDQWMPVRANCDDDQLLRVIEYEDVSDY
LFSIYSKEARLSLVSQFIDFYGGRMTQWTCTNSSTWVEKTLSLEALTDPLLDELRVNDFL
TKSEGNPVGISLEHLLSSANGISMRTNMMKFLRNASLLCMTVFPQNFILEEAALVAEELS
NTMMNSSSCSVTPCRVLAKSLLKSNRQDILLCGVYAQREAVFGNIDHARKIFDMALSSIE
GLPVDVRRNESLLYLWYAEVELANFSHGSPESLLRALHILSCLGSGVKYTPYKCQPSSLL
QLRARQGFRERINLLRSTWTRGGIDDQSVALVCSAALFEEISIGWRASAEIFDQAFSMVL
PERRRNSYHVESLFNYYVAMLSKHHREVKLSKVWQSILNGLQMYPFSPKLYSALVQISHL
YTSPNKLRLVFDEYCKKKPSVINWLFALSFEISRGGSQHRIRRLFERALEDEKLRNSVII
WRSYITYEHDITCNASAARRVFFRAVHACPWSKKLWLDGFLKLNAILTAKELSDLQEVMR
DKELNLRTDIYEILLQDEMEC
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggaagaagacgaatctgcgcaacaaaagcaagagacaagtgaagagcctaaa
acgacgtcatctctctttccagtttcccctcaattctcaatttctgctgccgccggcgcc
ggcgccgttccggaatggcttcgcaactccagcttcacgaccaacctctccgtcataaac
gactccctatcggcgcaccaccgccatgcccccttccagtacgaagacaaagaggaggaa
gaagaagaagttgataagggctctaataaagaaagagcacagtacgagttgctggactct
tccgcatcagaccgcggcccctcttcttctccttcggacgaagagagggacaacagaagg
aaaaggcggatgaagaagcgtaagcggaggagggaacgctccgctgatgcgcgtaagcca
tacgagcatgctctattttcttcacgaaaaccagatgtgggaagctgggcgtcgtcttct
gctgctgctgccactaatgacagagactattactttgattcccgtggagatcgtgataat
ttggcctttggatgcctatacaaaatggatgttgctcggtacaaacttcataacactagg
aaaacatttgagcttaattattgttggcggaaccataatagcatttttgatccagacggt
gatgttgatgcatttgatagcaagctcagagctgagggtcgctactggtctgcaaaatat
gctgctgtggagcgtcataagaacttgaagcgaacgcgaattttttctcatgcaaggccc
cagttgaaagattctgttgattttatccctttgattgatgaaggatctggaggtgaatca
gtttcaggagctactgtagtggaggaatcatgggaagatgaaatattttgcaagacaaag
gagttcaacaagatgacaagagaacgaccacaggatgagaaaatttggttggacttcgct
gattttcaggacaaggttgccagtatgcagccacataaaggcgctcgtcttcaaatactt
gaaaagaagattagtattctggagaaggctactgaacttaatccagatagtgaagacctg
cttctctctcttatgaatgcttaccagagcagagatagtatagatgtcttgataagtcgg
tgggaaaggatacttctgcaaaactctgacagttatactttgtggagagaatttttgcgg
tttgttcagggtgaattttcaagattcaaggtgtccgaaatgagaaaaatttatgcaaat
gcagtacaagctttatctggtgcatgcagtaagcagcataggcaggtctgccaaggtgct
atgccagtttctcttgatccagctattgtaaaactagaagttggtttagttgatatattt
atgtctctctgtcggtttgagtggcaagcggggtacaaagagttggctactgccttgttt
caagcagagattgaatatagcttgttctccccttctttacttcttagcaaaaacagtaaa
caaagactttttgaacatttttggagtagcaatggtgctagagttggggaagatggagca
cttggctggtcaacatggttagaaaaggaggaagaacagagacaacgggcagtggaggaa
tcttcaactaatgttgacgaaggtggttggactggttggtcagaaccattatcgaaaatc
aaagaaattaatgaagtttcagaaaaggtgatagatagtgatggtgttctcgaggagtta
gaggatggagctgaaatgcaagaagctgatgagaaggatgatactgaagctttgttgaaa
atgcttgggattgatgctgctgctgctgaagtgaatggtgaggtcaaagacacaagaaca
tgggctaggtggtcagaagaagaggtagaaagggattcagaccagtggatgcctgttcgt
gcaaattgtgacgatgaccaacttttgagagtaatagaatatgaggatgtcagtgactac
ttattctcaatatattctaaggaagcacgcttgtctctggtatcccaatttattgatttc
tatggcgggaggatgactcaatggacttgcactaatagttctacttgggtggagaagacc
cttagtctggaggcactgacggatcctttgttagatgaactgagagttaatgatttttta
acaaaaagtgagggaaacccagttggtatcagtttggagcatcttttgagcagtgctaat
ggcatatctatgcgcaccaatatgatgaaatttctccgtaatgcttcattgctttgcatg
actgtattcccacaaaatttcatccttgaagaagcagctcttgttgctgaggagctgtca
aataccatgatgaattcatccagctgttcagtcaccccttgtcgagtgcttgcaaagagt
ctattgaaaagtaaccgccaggatatattgctatgtggagtctatgcacagagagaagca
gtgtttgggaatattgatcatgctagaaagatttttgacatggcattgtcatccattgaa
gggcttcctgtggacgttcggagaaacgagtctctgttatatctctggtatgctgaagta
gagctggcaaacttttctcatggtagtccagaatcattgctccgtgctttacacatttta
tcttgcctgggaagtggtgtgaaatacactccttacaaatgtcaaccatcgagtctgctg
cagctgagagcacgccaaggatttagagagagaataaatttgctacgttcaacctggaca
cgtggtgggatagatgaccagtcagttgctcttgtatgttcagccgctttgtttgaggaa
attagtattggatggagagcaagtgctgaaatttttgaccaggcattttcaatggttctt
cccgaaagaagaaggaacagctatcatgtagaatctttgttcaactattatgttgccatg
ctttctaaacatcacagagaagtaaagctatcaaaagtgtggcagtctatattgaacggg
ctgcagatgtatcctttcagtccaaaactttacagtgcattagttcaaatcagccatctt
tacacttcgccaaataagctaaggctggtatttgatgaatactgcaaaaagaaaccatct
gttattaattggctatttgcattgtcattcgagataagtagaggtggttcccagcataga
atacgcagactttttgagagggcattagaggatgagaaactgcggaattcggtgataatc
tggcgtagctacatcacatatgaacatgatataacatgcaacgcatcagctgcaagaaga
gtcttcttccgagcggtccatgcttgcccatggtcaaaaaagttatggcttgatggtttt
ctgaagctaaatgccatactcactgcaaaggagctctcagatctccaggaagtaatgcgg
gataaagaactgaatctaaggacggatatttatgaaattcttctgcaagatgagatggaa
tgctga
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