Ipomoea nil (Japanese morning glory): 109174809
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Entry
109174809 CDS
T04663
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109174809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ini03400
]
109174809
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
109174809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
GvpD_P-loop
Motif
Other DBs
NCBI-GeneID:
109174809
NCBI-ProteinID:
XP_019179593
LinkDB
All DBs
Position
Un
AA seq
1099 aa
AA seq
DB search
MDGSRRIYTRNQWDKRWNEEKKRKLSQSCKNESSGFTGNGSSEHGSTSRMVGKIVGEKAG
GSGSSGNGDNFSFMEGLNRNKKKRRIESENVVKEVEKNKKVKVKEKIVIDAHNVSSEDKD
EDEDDNDAAGDEEFALQSILSEKTDNRAEESSKKVEAKAVLADNFSTDSGESRGSPLNEK
NSDYDDDYFEFLEEYLAVPPSGKEKSKHGVEMNNEAVDDIKCGSDASESFALSSDSTENL
EKWAEKKKMNEKGKRKAKLEIIDDDVSPKVEGLDNVNIKDGPAYRLRSRSVSKYEMKEKD
PANVTNPLPPPKEDWGSETSSDDKKDDCCVRIHVNKDKKNVERPSKRRKGKHGLGELNFK
KILLNSILKDVDITKNNLQFCNENIPGQLPLKFRFEDEVPTPPEKMEWEIEIDSLFVDLQ
TGLQEDKDSLTTTQPSVNEDNISAEKHDDSAVCCEKGNHFIILDEQIGLICKYCSFVSLE
MKYILPEFAKKTGRRQGMRFYDDLDCPLNGDNLPLDGASGNHCNSIHGGTTVWDILPPGT
KGTMYPHQREGFEFLWRNIGGDIHIENLKKLQSDCGKGCIISHAPGTGKTRLTIVFLQSF
MKLFPDSHPVIIAPRSMLLTWEAEFRKWDVDIPFHNVNNPALSGRENSISHNFLNEFKNT
ESKRLLKVYSWAEGSGILGITYRLFEQCVRVKENKEDDKLRKILLQVPGLVVLDEGHTPR
NDESLIWKALSKLETPRRIILSGTPFQNNFDELYNTLCLVSPKFSDFSSGSPLKHMRRTK
AAKKKWDRLTSSIGKNKNDAIKELKRIIAPLVHVHNGSVLQERLPGVRSTLVYLKPTSWQ
KKLFSAIPQKKLFEEDHVMTRISVHPSLAKDIPEFSEYRSEMKKLELNPDAGVKTEFLFA
LICLSVSHGEKVIVFSQYIAPMELIKKQLKSVFDWVEGREVLHMDGEIDVHHRQASINTL
NDPKSEVKVLLASTRACCEGINLVGASRVVLLDVVWNPSVKRQAISRAYRLGQKKIVHVY
HLISSTMEARKFACQRKKDFISELVFSTSDGLPCEKGLPVSEDKILEAMVQHPKHRHIFD
RLYHDPKVSDLIDTFNFVE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggatggtagtaggaggatttataccaggaaccagtgggataaaagatggaatgaggaa
aagaagagaaaattaagtcaaagttgcaagaatgagtcatctggatttactggtaatgga
agcagtgagcatggttccacaagtagaatggtggggaaaattgttggggaaaaagctggg
gggagtggcagttctggtaatggtgataatttctcattcatggagggattaaataggaac
aagaaaaagaggaggattgaatcagaaaatgtggtaaaggaggtggagaagaacaagaag
gttaaggtgaaagaaaaaattgtgattgatgcccataatgttagttcagaagacaaagat
gaagatgaggatgataatgatgctgctggggatgaagaatttgcccttcaatcaatactt
tcagagaagactgacaaccgggcggaggagagcagcaaaaaggtggaggcaaaggcagtt
ttggcagataatttcagtactgatagcggtgaatctcgtggaagtccattgaacgagaaa
aattctgactatgatgatgactattttgaattcttggaggaatatttggctgttccacca
tccggtaaagaaaagtcaaaacatggggtagagatgaacaatgaggctgtggatgatata
aaatgcgggagtgatgcaagtgaatcttttgctctttcgtcagatagtaccgagaatttg
gaaaaatgggcagagaagaagaagatgaatgagaagggaaagagaaaggcaaaattggag
atcatagatgacgatgttagtccaaaggttgaaggtttggataatgttaatataaaggat
ggtcctgcatatcggcttaggtcccgttcagtctccaaatatgaaatgaaggaaaaggat
cccgcaaatgttacaaacccactccctcctcctaaggaggattggggatccgagacttca
tctgatgacaaaaaagatgattgttgtgtgcgaattcatgttaataaagacaaaaagaac
gtagagcgcccaagcaaaaggaggaagggaaaacatggattgggagaacttaactttaag
aaaatacttctcaactctatattgaaggatgtggatatcaccaagaacaatctgcaattt
tgcaacgagaatattcccgggcagttgcctctaaagttccggtttgaggatgaagttcct
actccgcctgagaaaatggaatgggagatcgaaattgacagcctctttgtggatcttcaa
acaggtctacaggaagacaaggatagcttaacaaccactcaaccttcggtgaatgaagac
aacatatctgcagaaaaacacgatgattcagcagtctgctgcgaaaaggggaaccatttt
attattttagatgaacagatcgggctaatctgcaagtattgttcctttgtgagtctggag
atgaagtacatcttacccgaatttgctaaaaaaaccgggaggagacaagggatgagattt
tatgacgatttggattgtcccttaaatggcgataacctcccattggatggcgcttctgga
aatcattgtaattcaatacatggcggaacgacagtatgggacattcttcctccggggact
aaaggaacaatgtatcctcatcaacgcgaggggtttgagttcttatggagaaacattggc
ggggatattcacatcgagaatctgaaaaagctgcagtctgattgtgggaagggatgcata
atctcgcacgcgcctggtactgggaaaacccgcctcacgatagtgtttctccagtcgttc
atgaagctcttccccgatagccatccagtaatcatagcccctcgaagcatgcttcttacc
tgggaagctgaattccgaaaatgggatgtggatattcccttccacaacgtgaacaatcca
gcgttgtcgggtagggaaaacagtatctcgcataattttctgaatgaattcaaaaacaca
gaatcaaagcgactgctgaaggtgtattcgtgggcagaaggttcgggtattctgggaatc
acctatcgcctgttcgagcagtgtgtcagagtgaaagaaaataaagaagatgacaagttg
agaaaaattcttcttcaagttccaggtctagtagtgcttgatgaagggcacactccgaga
aacgatgaaagtcttatttggaaggccttgtcaaaactagaaacgccacggagaattatc
ctatccggaacgcccttccaaaacaactttgatgagctatataataccctctgccttgtt
tctccaaaattttccgatttttcttctgggagtccgctaaaacatatgcggagaacgaag
gcagcaaagaagaaatgggatcgtcttactagttctattggaaagaacaagaacgatgcc
ataaaggaactcaagagaatcattgccccgctagtccatgtacacaacggctctgtactg
caagagcgtcttcctggcgtaaggagcactttggtctacctaaagcccacgagttggcaa
aagaagttgttcagtgcaataccacagaaaaaactctttgaggaagatcatgtcatgact
cggatatctgttcacccttcactggcgaaagatattccagaattttccgaatacaggagc
gagatgaaaaaactcgaattgaatcccgatgcaggagtgaagaccgagttcctctttgca
ctgatatgcttaagtgtgtcacatggcgaaaaagttatagtctttagtcagtatattgcc
ccgatggagcttattaagaagcagctaaaatctgtgtttgattgggttgaaggccgggaa
gtgttgcatatggatggtgaaatcgatgtgcatcatcgccaagcgtctattaatacgctt
aacgatcccaagagtgaagtgaaggtgcttctcgcatcaaccagggcctgttgtgaaggc
ataaacctggttggggcttcgagagttgttttgctcgacgtcgtttggaatccctcggtt
aagaggcaagcgattagtcgggcatataggctcggtcaaaagaagattgtgcatgtatat
cacttgatttcttcaaccatggaggctaggaaatttgcttgccagaggaaaaaggacttc
atatctgagttggtcttttctacctcggatgggcttccttgcgagaaaggcctcccggtt
tctgaagacaaaatattggaagccatggttcagcatcctaagcaccgccatatatttgat
cgcctatatcatgatccgaaagtgtcagatttaatcgacacatttaactttgtggaatga
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