KEGG   Ipomoea nil (Japanese morning glory): 109175790
Entry
109175790         CDS       T04663                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03018  RNA degradation
ini03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109175790
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109175790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ini03019]
    109175790
   03041 Spliceosome [BR:ini03041]
    109175790
Messenger RNA biogenesis [BR:ini03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109175790
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109175790
Spliceosome [BR:ini03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109175790
SSDB
Motif
Pfam: LSM bHLH_SAC51 DUF150_C Hfq
Other DBs
NCBI-GeneID: 109175790
NCBI-ProteinID: XP_019180690
LinkDB
Position
Un
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVVGTLKGYDQLLNLVLDEAIEYLRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVAPTDGTDEIANPFLQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcaggtaggaaagaaacagttctagatttggcaaagttcgttgacaagggtgtgcaa
gtaaagcttactggtggcagacaagttgtgggaacactaaaaggctatgaccaattgctg
aatcttgtcttggatgaagccattgagtatcttagagattccgatgatcctctgaagaca
acagatcagacacggcgtcttggattaattgtctgtagggggactgcagttatgcttgtg
gcgccaactgacggcacagatgagattgccaatccttttctccagccagatggagcatag

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