Ipomoea nil (Japanese morning glory): 109177654
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Entry
109177654 CDS
T04663
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03020
RNA polymerase
ini03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109177654
09124 Replication and repair
03420 Nucleotide excision repair
109177654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109177654
03400 DNA repair and recombination proteins [BR:
ini03400
]
109177654
Enzymes [BR:
ini01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109177654
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109177654
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109177654
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
109177654
NCBI-ProteinID:
XP_019182613
LinkDB
All DBs
Position
Un
AA seq
1832 aa
AA seq
DB search
MDLRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHSETTERGKPKPGGLSDQRLGTI
DRKLKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRCVCFNCSKILADEDEPK
FKQAMRIRNPKNKLKKILDACKNKTKCEGGDEINLQGQDSEEPVKKPKGGCGAQQPKISI
DGMKMVAEYKLQKKKNDDPEQMPEPVERKQQLTAEKVLSILKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LLRYSAWHSDAETGYITPGDTQVRIEKGELLSGTLCKKSLGTSSGGLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQGFSIGIGDTIADSRTMENINITISDAKNKVKELIDVYQDKQL
EAEPGRTMAETFENRVNQVLNKARDDAGTFAEKSLAESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIGRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LESLKVKKSTFENMYKYEIDDPNWNPNYMIPDAIDDLRTIREIRSVFDAEVQKLESDRLQ
LGTEIAVNGDNSWPLPVNIQRMVLNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVH
GDDYLSIEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVAKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIPEDVEFVKSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKVNLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNTKVQKFDMNEGFKA
ETEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEILGIEAVRKSLLDELRAVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEADY
LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEIPLPSYMDGGLEFGMTPARSPISGT
PYHHDGLMSPMLSPNLRMSPSSDAQFSPYVTGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSPSIAYSPTSPKISPS
SPYSPSSPSYSPTSPSYSPTSPNYSPSSPTYSPSSPYNSAASPDYSPSSPPYSPSAGYSP
SAPGYSPSSTSQYTPHMSDKDDKSVKDDKSKR
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgctttccgttctcgccggcggaggtcgccaaggtccggctggtccagttc
ggcatactgagccccgatgaaatccggcaaatgtcagtggtgcatattgagcacagtgag
acgacggagagaggaaagccgaagcccggtggtctgagcgaccagaggcttgggaccatt
gaccggaagctcaagtgcgagacttgtatggcaaacatggcggagtgccctgggcacttt
ggtcacctcgagcttgctaagccaatgtttcatattggattcatgaaaactgtgcttagt
attcttcgttgcgtctgcttcaattgctccaaaatactagcagatgaggacgaacccaaa
ttcaaacaagcaatgaggatacgaaatcctaagaacaagctaaaaaagattttggatgca
tgcaaaaacaaaacgaaatgtgaaggaggggacgaaataaatttacaagggcaagattct
gaagaacctgtaaagaagcctaagggtggttgtggagctcaacagcccaaaattagcata
gatggtatgaaaatggttgctgaatataaactccaaaagaagaagaatgatgatccggaa
cagatgcctgagccagttgaacggaaacaacaacttactgcagaaaaggttctcagcatt
ctgaagcggataagtgatgaagactgtcaattgttagggctgaaccccaaatatgctcgt
ccagactggatgattcttcaagtacttcccatacccccgccaccagttaggccttctgta
atgatggatacatcatcccggagtgaggatgatttgactcatcagctagctatggttatt
cggcataatgagaacttaaagaggcaggaacggaatggggcgcctgcacacatcatatct
gagtttgcacagttattgcagtttcatattgctacttattttgataatgaacttcctggt
caaccaagggctactcaaagatctggtagacctatcaaatcaatatgtagcagattaaaa
gcaaaagagggtcgaatcagaggtaacttgatgggtaaacgtgtggatttttctgctcgg
actgtgatcactcctgatccaactattaacattgatcaattgggagtcccatggagtatt
gctctgaatctcacttatccagaaactgtgacaccgtataacattgagaggttgaaggaa
cttgttgaatatggtcctcatcccccacctggtaaaactggggccaagtatataatcaga
gatgacggacaaaggcttgatctccgttacttgaagaagagcagtgatcaacaccttgag
cttggatataaggtggagcggcacttgaatgatggagattttgttctgttcaaccggcaa
cctagtctgcataagatgtctataatgggacataggataaaaatcatgccatactcaact
tttcgtttgaatttgtctgtcacctcaccttacaatgctgattttgatggtgatgagatg
aacatgcatgttccgcagtcatttgaaactagagcggaagtactggaactcatgatggtc
cccaagtgcattgtgtcgccccaggcaaatcgacctgttatgggaattgtccaggacact
cttctaggttgtcgcaaagttactaaaagagacactttcattgagaaggatgtttttatg
aacatattgatgtggtgggaggattttgatggaaaggttcctgctccagcaattttgaaa
cccaggccactttggacagggaaacaagtttttaatcttatcataccaaaacagataaat
ctcttgagatattctgcttggcattcagatgcagaaacagggtacattactccgggggac
actcaagttagaatagaaaaaggggagttgctttctggaactctttgcaagaagagtctt
gggacatccagtggaggtctaatacatgttatctgggaagaggtaggacctgatgcagct
cgcaaatttttgggacatactcagtggctggttaactattggctcttgcaacaaggtttt
agtattggaataggggatacaattgctgattctagaaccatggaaaatatcaatataact
atctcagatgcaaagaacaaagtcaaagaacttatcgatgtttatcaagataaacagtta
gaggctgaacctggtcgaacgatggctgaaacatttgagaatagagtaaatcaggttttg
aataaggctcgtgatgatgctggaacttttgctgagaagagtttagcagagagcaataat
cttaaagctatggttactgctggatcaaaaggaagttttatcaacatttcacaaatgact
gcctgtgtggggcagcagaacgttgaagggaagcgaattccctttgggttcataggaagg
acgctgcctcattttaccaaggatgacaatggtccagaaagtcgtggctttgtcgagaac
tcttatttacgaggactgactccacaggagttctttttccatgctatgggaggtagagaa
ggtctgattgatactgctgtgaaaacttctgagactggatacatccagaggcgacttgta
aaggccatggaagatatcatggtcaaatatgatggtactgtgaggaactctttaggagat
gttatacagtttctttatggggaagatggtatggatgcagtttggattgaatcacaaaag
cttgagtccttgaaagtgaagaaatcaacttttgagaacatgtacaaatatgagattgat
gatccaaactggaatccaaattacatgatcccagatgctattgatgatttgagaacaata
cgggagatccgcagcgtctttgatgctgaggttcagaagcttgaatctgatagattgcaa
cttggaacagagattgctgttaatggtgataacagttggccactccctgttaacattcag
aggatggtcttaaatgctcaaaagacttttaggattgacttccgaaggccatctgacatg
catcctatggagattgtggaagctgttgacaagttacaggaaaggcttaaggttgttcat
ggtgatgactatctcagcatagaagctcaaaaaaatgctacacttttcttcaatattttg
cttcgtagtgccttggccagtaaaagggttctaaaggagtacaggcttactagggaagct
tttgattgggttataggggaaatcgaatcccgctttttacaatcacttgtagcacctgga
gaaatgattggttgtgttgctgcacagtccataggtgagcctgccacacaaatgactctt
aatacattccattatgctggtgtcagtgccaagaatgttactttaggtgtaccaaggttg
agggagatcattaatgtggcaaagaaaattaaaaccccatcgctttctgtgtacttgaag
ccagaagtggctaaaacaaaagaaagagctaaaactgtgcagtgtgctctggagtatacc
accttgaggagtgtaacacaagctacagaagtgtggtatgatccagatcctatgagcaca
ctcattccggaagatgttgagtttgttaagtcctattatgaaatgccagatgaagatatt
gaccctgataagatctctccttggttgcttcgcattgagttgaatcgtgaaatgatggta
gacaagaagcttagcatggctgatattgcagaaaaggtcaaccttgaatttgatgatgac
ctgacctgcatctttaatgatgataatgctgagaaactgattcttcgtattcgcatcatg
aatgatgaagctcccaagggtgaactgactgatgaatctgctgaggatgatgttttcctc
aagaagatagagagtaacatgttaactgagatggctctccgcggcatccctgacataaac
aaagtgttcattaagaatacaaaagtacaaaagtttgatatgaatgaagggtttaaagcg
gagactgaatggatgttggacacagagggtgtgaaccttctagctgttatgtgtcatgaa
gatgttgatgctaagagaaccacaagtaatcacttgatagaagtgattgagattcttgga
attgaagcagttcgcaagtcattgctcgatgaattgcgtgccgtcatatcttttgatggt
tcttatgtgaattatagacatttagccattttgtgtgacaccatgacctatcgtggtcat
ttgatggcaattactcgtcatggaatcaatcgcaatgatactgggcccatgatgagatgc
tcatttgaagaaactgtagacattcttcttgatgctgctgtgtacgctgaagcagattat
ttgaggggtgttactgaaaacattatgttgggtcagcttgcaccaataggcaccggtgac
tgtgctttgtacctcaatgaggagatgttgaaacaagctatagaaatcccactgcctagt
tacatggacggtggtcttgaatttggcatgacacctgctcgttctccaatcagtggaacc
ccctaccatcatgatggtcttatgtctccaatgctgagccctaatctccggatgtcaccc
tcttcggatgctcagttttctccttatgttactggaatggctttctcacccacttcatcc
cctggatatagtccatcatcgcctggatacagtccatcttcacctggatacagccccacg
tctccaggatacagccccacatcccccgggtacagccccacttccccaggatacagcccc
acttcacccacctatagtcctagttcccctggttacagccccactagtcctgcatattct
ccaaccagtccgtcatattcacccacttctccaagctacagtcctacgtcaccaagttac
agccctacatctcctagttacagcccaacctctcctgcatacagcccaacctctcctgcc
tatagcccaacatctccatcttacagcccaacatcaccgtcctacagccccacctctcca
tcttacagcccaacctcaccatcatatagcccaacgtcaccttcatatagtccaacatca
ccatcctacagtccaacatcaccagcgtacagtcccacctctcctgggtacagtcccaca
tcaccgagctacagcccaacatccccatcatatagtcccacctcaccgagctacaatcct
tcagcgagatacagtccatcaattgcgtactcgcctaccagtcccaagatttctccttct
agtccttacagcccttcttccccaagttacagtcctacatcaccatcatactcaccgaca
tctccaaattattcaccttcaagcccaacatatagtccaagcagcccatacaactctgct
gcaagtccggactacagccctagttctcctccgtacagtccaagcgcaggttactctccc
agtgcacctgggtattcaccgtcttctacaagccaatatacgcctcacatgagtgacaag
gacgacaagagcgtgaaagacgacaagagcaaacgctag
DBGET
integrated database retrieval system
