Ipomoea nil (Japanese morning glory): 109179400
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Entry
109179400 CDS
T04663
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ini03016
]
109179400
Enzymes [BR:
ini01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
109179400
Transfer RNA biogenesis [BR:
ini03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
109179400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
109179400
NCBI-ProteinID:
XP_019184441
LinkDB
All DBs
Position
Un
AA seq
617 aa
AA seq
DB search
MEDIEDLLAGSGGGSPPGFRLPLTAAVVGVNPKQRKRSGLRKSTFPQDLLSSTTNQTPKI
PGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYALSDDPNEADLWLINTCTVKSPSQSAMD
TLLTRGRSAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLT
RKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVKNVVA
DGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVSGLPSDGSTMLRIGMTNPPYILEHLKEI
ADVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTVAEFRKVVDTLTELVPGMQIATDIICG
FPGETDEDFAQTVNLVRDYQLPQVHISQFYPRPGTPAARMKKVPSNVVKNRSRELTAVFE
SFTPYTGMEGKVERIWITDVASDGVHLVGHTKGYIQVLVVGPTSMLGSSAIVKITSVGRW
SVFGEVIEVLNQNSQERNEANGSPCTNSHENCACSKEPESCACAATSCCQTTVPKNDSRQ
VDKQNANLIGWLLRKRKNHLHRKEAETVLQESKNIQGVSPGHATATTTTTLSSGIIFGLL
TLIALLLFLGFMNLSSN
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggaagacattgaggatttgctcgcaggaagcggcggaggatcaccgcccggtttccgg
ctgccgctaacggcggcggtcgtcggagtcaatcccaagcagcggaagaggagtggtctc
cggaagtccacctttccccaagatttactctcgagtaccaccaatcagacccccaaaatc
cccggcactcagacaatttatgtaaagacattcggctgttcgcataaccagagtgactca
gaatatatggccggtcagctttctgcatttggttatgctttgagtgatgaccccaatgag
gcagacctgtggctaataaacacctgcacagttaaatcccctagtcagtctgccatggat
actcttttaactagagggagaagtgcaaaaaaaccactggttgtggcagggtgtgtgcct
caaggaagccgcaatttgaaagaactagaaggcgttagtatagttggggttcagcagatt
gaccgtgtggtagaagttgtggaagagactttgaaaggtcatgaagtccgccttctaacc
cgcaaaacattaccagcacttgacctgccgaaggtgaggaagaacaagttcattgagatt
cttccaattaatgttggatgtttaggtgcatgcacatattgcaagacaaaacatgcccgt
ggtcatttaggaagctacactgttgaaagtcttgtgggacgggtcaaaaatgttgttgct
gatggagtgaaggagatctggttgagtagtgaagacactggggcatatggtcgtgatatt
ggagttaatcttccaattctgttaaatgctatagtttctgggcttccctcggatggaagc
acaatgcttcgcattgggatgactaatcctccttatatccttgaacacttgaaggaaata
gctgatgttttgcgtcatccgtgtgtttactcttttcttcatgtacctgttcaatctgga
agtgatgccgtcttgagtgcaatgaatcgtgaatacactgtagcagagttcaggaaggtg
gtggatacattaaccgaactagtccctggaatgcagattgccacagatataatatgtgga
tttcctggtgaaactgatgaagattttgctcagactgttaaccttgttagggattatcag
cttcctcaagttcatatatcacagttttatcctagacctggaactcctgctgcaaggatg
aagaaagttcctagtaatgtggtgaagaatcgaagtcgtgagttaactgctgtatttgag
tcgtttactccatatactggaatggagggcaaagttgaaaggatatggatcacagatgtt
gcttctgatggagttcacttggtgggacacacgaagggatacattcaggtgctggtggtt
ggtcctacgagcatgctgggatcctcggctatcgtaaagataacgtcagtaggaagatgg
tcagttttcggagaagtgatcgaggtccttaaccaaaatagccaggaaagaaacgaagcc
aacgggtctccttgcaccaactcacacgaaaactgtgcatgttccaaagagccagagtca
tgtgcttgtgctgctacgtcttgctgtcaaactacagttccaaagaacgactcgagacaa
gtagacaaacaaaacgcaaacctcattgggtggttactcaggaagcggaagaaccatttg
catagaaaagaggccgagacagtactacaggaatctaagaacattcaaggagtgtcaccc
ggtcacgccacagccacaaccacaaccacattatcaagcggaatcattttcggtttattg
acattaatagcactattattgtttctgggtttcatgaatttgtcatccaactga
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