Ipomoea nil (Japanese morning glory): 109179986
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Entry
109179986 CDS
T04663
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109179986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109179986
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109179986
Spliceosome [BR:
ini03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109179986
Complex C
U5 SnRNP specific factors
109179986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
DUF7863
T2SSE
INT_SG_DDX_CT_C
AAA_11
Motif
Other DBs
NCBI-GeneID:
109179986
NCBI-ProteinID:
XP_019185003
LinkDB
All DBs
Position
Un
AA seq
2174 aa
AA seq
DB search
MSHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKGFGDRVF
KGKPAELEEKFKKAKKKKEREPLSSEPIPSRQSKRRRLQEESVLTATEEGVYQPKTKETM
AAYEVMLNIIQQQLGGQPLNIVSGAADEILAVLKNDNIKNPEKKKEIEKLLNPIPNNVFD
QLVSVGKLVTDYQDGSDAVVSAAANGDDALDDDVGVAVEFEENEEEEEESDLDMVPEDEE
EDDGLEENGAGAMQMGGGIDDDEMLEADEGMALNVQDIDAYWLQRKISQAYEQQIDPQQS
QKVAEDVLKILAEGDDREVENKLLLHLDYERFSLVKYLLRNRLKVVWCTRLARAEDQDMK
KKIEEEMMELGPDHTAILDQLHATRASAKERQKNLEKSIREEARRLKDETSGDGDRGRRM
ISDRDVESGWLQGQRQLLDLDNLAFHQGGLLMANKKCELPLGSYRNHKKGYEEVHVPALK
PKPLAEDEKFVKISSMPEWAQPAFRGMTQLNRVQSKVYETALFTPENILLCAPTGAGKTN
VAMLTILQQIALNRNEDGSFNHNKYKIVYVAPMKALVAEVVNNLSNRLQEYGVNVKELSG
DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
VARTVRQIETTKEHIRLVGLSATLPNYDDVAVFLRVDLQKGLFHFDNSYRPVPLAQQYIG
VTVKKPLQRFQLMNDVCYEKVIAVAGKHQVLIFVHSRKETAKTARAIRDAALGNDTLGKF
LKEDSASREILQSHTELVKSNDLKDLLPYGFAIHHAGLVRADRQIVEELFADGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDTYGEGIIIT
GHSELQYYLSLMNQQLPIESQFISQLADQLNAEIVLGTVQNAKEACKWLLYTYLCIRMVR
NPSLYGLAADALKNDITLEERRADLVHSAATLLDKNNLIKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKIELAKLLERVPIPVKES
IEEPSAKINVLLQSYISQLKLEGLSLTSDMVFITQSAARLMRALFEIVLKRGWAQLAEKA
LKWCKMISKRMWSVQTPLRQFHGIPNEILMKLEKKDLAWERYYDLSSQELGELIRYPKMG
RTLHKYIHQFPKLNLSAHVQPITRSVLRVELTITPDFIWDDKVHGFVEPFWVIVEDCDGE
YILHHEYFMLKKQYSDEDHTLNFTVQIYEPLPPQYFIQVVSDKWLGSLTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPAYETLYQEFKHFNPVQTQVFTVLYNSDDNVLVAAPT
GSGKTICAEFAILRNHQKGSDSVMRAVYIAPIEALAKERYSDWKKKFGQGLGMRVVELTG
ETATDLKLLEKGQVVISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVI
VSRMRYIASQLDKKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV
DIANFEARMQAMTKPTYTAIVQHAKNGKPAIVYVPTRKHARLTAVDLMTYSSVDSGERPM
FLSQSPNELEPFVESIKEPMLKETLKYGVGYLHEGLTSTDQDIVKTLFENGWIQVCVMSS
SMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA
PRKDYYKKFLFEAFPVESHLQHYIHDNLNAEVVSGVIQNKQDAVDYLTWTFMYRRLTQNP
NYYNLQGVSHRHLSDHLSELVENTLIDLEASKCVAVDDDFLLSPNNLGMIASYYYINYTT
IERFSSSLTSKTKLKGLLEILTSASEYQQLPIRPGEEELIRRLINHQRFSFENPKYSDPH
VKANALLQAHFARQVVGGNLASDQQEVLLSANRLLQALVDVISSNGWLNLALLTMEVSQM
VTQAMWERDSMLLQLPHFTKDLAKKCQENPGKNVETVFDLLEMEDDERRELLQMSDSQLM
DIARFCNRFPNIDLTYEVVESENVSAGGDDVSVQVTLERDLEGRTEVGPVFAPRYPKTKD
EGWWLVVGDPKSNQLLAIKRVSLQRKSRIKLDFAAPAEPGKKTYTLYFMCDSYLGCDQEY
TFTVDVKEAGAFDD
NT seq
6525 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatttggggggtggtgcagaggcacacgcacgcttcaaacagtatgagtacaga
gctaattcaagtcttgtcttaactactgattctcgccctcgggatacccatgagcctact
ggtgagccagagtctctttggggcaaaattgatcctaaaggttttggtgatcgtgttttc
aagggcaaacctgctgaacttgaggagaagtttaagaaggcaaagaagaagaaggagaga
gaaccactttcatctgaacccattccctctagacagagcaaaaggaggcggcttcaggag
gaaagtgtgcttacagccaccgaagaaggtgtttaccaaccaaaaactaaagaaacaatg
gctgcatatgaagtaatgctcaatattatccagcagcaacttggagggcagccactgaat
attgtcagtggagctgcagatgagattctagctgttctaaaaaatgataacattaagaat
cctgagaagaaaaaggagatagagaagttgctgaatccgatcccaaacaatgtatttgat
cagttggtttccgttggcaagctcgttactgattatcaagatggcagtgatgcagtggtg
tctgctgctgccaatggtgatgatgctcttgatgacgatgttggtgtagctgtcgagttt
gaggagaatgaggaggaggaggaggaaagtgatcttgatatggtgccggaagatgaagag
gaggatgatggattggaagagaatggtgctggtgctatgcagatgggtggaggaattgat
gatgatgaaatgctggaagctgatgagggtatggccttgaatgttcaggacattgatgct
tattggctacaaagaaagatctctcaagcttatgagcagcagattgacccgcagcaaagc
cagaaggttgctgaagacgttcttaaaatccttgccgagggtgatgatcgggaagtggag
aacaagttgctgttgcatcttgattacgaaagatttagtctcgttaaatatttattgcgg
aacaggcttaaggtagtttggtgcactcgcctagcaagagctgaagaccaagatatgaag
aagaaaattgaggaagagatgatggagttggggccagatcatactgctattttggaccag
ttgcatgccaccagggccagtgcaaaagagagacagaagaatttggagaagagcatcaga
gaagaggcccgccggctgaaagatgagactagtggggatggtgataggggacggagaatg
atttctgatagagatgttgagagtggttggttgcaggggcagcgacaattacttgacctc
gataaccttgcatttcatcaaggtgggctgttgatggcaaacaagaagtgtgagctccca
ctagggtcctatagaaatcataaaaaggggtatgaagaagttcatgttccagctttgaag
ccaaaaccattggctgaagatgaaaaatttgtaaaaatatcctccatgccagagtgggca
caaccagctttcagagggatgacccagttgaacagggtccaaagcaaagtatatgagact
gccctcttcacccctgagaatattttgttgtgtgctccgactggagcagggaagacaaat
gttgcaatgctcactatacttcagcagattgcattgaacagaaatgaggacgggtctttc
aaccataacaaatacaagatagtttatgtagcaccaatgaaggcacttgttgctgaagtt
gttaacaatttgagcaatcgtctgcaggagtatggtgtcaatgtgaaagagctgagtggg
gatcaaacattgactaggcaacaaattgaagagactcaaattattgtaacaacaccagag
aaatgggatatcattaccagaaagtcaggcgaccgcacctatacacaacttgtaaagttg
cttattattgatgaaatacatctcctacatgacaacagaggtccagttctggaaagtatt
gttgcaagaacagtgaggcaaattgaaaccacgaaagagcatattcgcctggttgggtta
tcagctactcttccaaattatgatgatgtggcagtgtttctgagggttgatctgcagaag
ggacttttccattttgataatagctataggcctgttccattggctcaacaatatatagga
gttactgttaaaaagccattgcaaagattccaattaatgaatgatgtgtgttatgagaag
gtaattgctgtggctggcaaacatcaggttcttatttttgtccactcaaggaaggaaaca
gctaaaactgctcgtgcgattcgtgatgctgctcttggtaatgatactctcggtaaattt
ctgaaagaggacagtgcaagtcgcgaaattctccaatcacatacagagctggtcaagagc
aatgatctcaaagatctgttgccctatggttttgcaattcatcatgcggggttggtcagg
gctgaccgccagattgttgaggagctttttgctgatggacatgttcaggttttggtttct
acagcaactctagcttggggtgtaaacttgcctgctcatacagtgataattaaaggcacc
cagatttacaatcctgagaagggagcttggactgaactcagccccctagatgtcatgcag
atgcttggccgtgctggaaggcctcaatttgacacctatggggagggcataattataaca
ggacacagtgaactgcagtattatttgtctttaatgaatcagcagcttccaattgagagc
caatttatttcccaattggctgatcagttgaatgctgaaattgtccttggtacagtgcaa
aatgcaaaagaggcttgcaagtggctcctctacacttacctctgtattcgcatggtacga
aatccctctctttatggcttggcagctgatgctctgaaaaatgacataacattggaagaa
aggcgagctgatctggttcattcagcagctacactgttggacaaaaataatctgatcaag
tatgacaggaaaagtggatatttccaagttacagacttgggtcgcatagctagctattat
tacataactcatgggacaatatcaacatacaatgaacatttgaagcctacaatgggtgat
attgagctttgtcggctgttctcacttagtgaggaatttaaatatgttacagttagacaa
gatgagaagattgaattggctaagcttctagaacgtgttcccattcctgtcaaagagagt
attgaggagcctagtgccaagattaatgttttgctccaatcatatatttcacaactgaag
cttgaagggttgtctttaacatcagacatggtcttcataactcagagtgctgcacgcctt
atgcgagcgctttttgagattgttctgaaaagaggttgggcccagctagctgaaaaggct
ttgaagtggtgcaaaatgattagcaagaggatgtggagtgttcagactccacttcgccag
ttccatgggattcctaatgaaatcttaatgaagttggagaaaaaagatttggcttgggag
aggtattatgatctttcctcccaagagttgggagagctcatccgttatccaaaaatggga
cgaacacttcacaagtacattcatcaattcccaaagcttaacctttctgcacatgttcaa
ccgatcactcgctcagtcttgagggtggagctaacaataacaccagattttatatgggac
gacaaagttcatggatttgtagagcctttctgggttattgtggaagactgtgatggggag
tatatccttcatcacgagtactttatgctgaagaagcaatacagtgatgaggaccacact
ttgaatttcacagtccaaatttatgagccattgcctcctcagtatttcattcaagtggta
tctgataagtggttaggatctctgactgttctgccagtttccttccggcatcttattttg
ccagaaaaatatcctcctccaacagagctattagacttgcaaccccttcctgtgactgct
ctgagaaatcctgcatatgaaaccctttatcaggaatttaaacatttcaacccagtccaa
actcaggtctttactgtcttgtacaactctgatgacaatgtattggttgcagcaccaacg
ggtagtgggaagaccatatgtgcagaatttgccattttgaggaatcaccagaaaggatct
gacagtgtcatgcgtgcggtgtatatagctccaatagaggctcttgctaaggagcgttat
agtgattggaagaagaaatttggtcagggcctaggtatgagagttgttgaactcactggg
gagacagctactgaccttaaacttcttgagaagggacaagttgtcattagcacacctgag
aaatgggacgctttatctcgtcgttggaaacagcggaaacatgtacagcaagtcagcctt
ttcatcattgatgagctccacctgattggtggtcagggtggtccagtcttggaagtgatt
gtctccaggatgagatatattgcaagtcagctagacaaaaagatccgtattgtagcttta
tcaacttctctggccaatgccaaggatttgggagaatggattggggctacctctcatgga
cttttcaacttccccccgggtgtcaggcctgtgccccttgaaatacacattcaaggtgtt
gatattgccaattttgaggctaggatgcaagctatgacaaagcccacatatactgcaatt
gtccagcatgcaaagaatgggaaacctgctattgtttatgttcctacaagaaagcatgca
cgacttactgctgtggatttgatgacttattcaagtgtggacagtggagagagaccgatg
ttcttatcacaatctccaaatgagctggagccttttgttgaaagcatcaaggaacccatg
ttgaaagaaacattgaagtatggggtaggttacttgcatgagggcttgactagcactgat
caagatattgtgaagacgctgtttgaaaatggatggatccaagtatgtgtcatgagcagt
tcgatgtgttggggagtacccctgtccgcacacctggtggtggttatgggaacacagtac
tatgatggcagggaaaacgctcatactgattacccagtcactgatttgttgcagatgatg
ggtcatgccagtcgacctcttttagacaactcaggaaagtgtgtcattctttgccatgca
ccacggaaagattactacaagaagttcttgtttgaagcattccctgttgagagccatttg
caacactatattcatgataatttgaatgctgaggtggtttctggagtaattcaaaacaag
caggacgcagttgattacctgacctggactttcatgtacagaaggctcactcagaaccca
aattactacaatcttcagggtgttagtcacaggcacctgtctgaccacctttcagagttg
gtggagaacacattaattgatctggaagccagcaaatgtgttgctgttgatgatgacttc
ttactttcaccaaataatcttgggatgatagcatcatattactatattaattatacaact
atagaacgatttagttcttctttaacatccaaaacaaagctcaagggtttactggaaatt
ctgacttcggcttcagagtaccaacagcttccaattcggccaggtgaagaggagttgata
agaaggttgattaatcaccagcgtttctcttttgagaacccaaagtactcagatccccat
gtcaaggctaatgctctactgcaggcccactttgctaggcaggtggtaggtggaaatctg
gcttctgaccaacaagaggtgcttctttctgctaataggcttcttcaggctctggtggat
gttatttctagtaatggttggctcaaccttgcactccttactatggaagtgagccaaatg
gtgactcaggccatgtgggaacgtgattcaatgttgctccaactcccacatttcactaaa
gatttagccaagaagtgtcaggagaaccccggcaagaatgttgagacagttttcgatttg
ctggaaatggaagatgatgagaggcgtgagctgttgcagatgtctgactctcagttgatg
gacattgcacgcttttgtaaccgctttcctaacatagacttgacatatgaagttgtagag
agtgagaatgtgagtgctggaggggacgacgtgagtgtgcaggtaacacttgaacgggat
cttgaggggagaacagaggttggaccagtttttgcaccaaggtatcccaagacgaaagat
gaaggatggtggctcgtggttggtgatcccaaaagcaaccagcttcttgctatcaagagg
gtgagtctccaaaggaagtcgaggatcaaacttgactttgctgctcctgctgaacctggt
aagaagacatacacactttatttcatgtgtgattcttacctgggatgtgaccaggagtat
acgtttacggttgatgtgaaagaggcaggggcttttgatgattga
DBGET
integrated database retrieval system
