Ipomoea nil (Japanese morning glory): 109180056
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Entry
109180056 CDS
T04663
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03013
Nucleocytoplasmic transport
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109180056
03015 mRNA surveillance pathway
109180056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109180056
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109180056
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RRM_ACIN1
Nup35_RRM_2
RRM_10
Motif
Other DBs
NCBI-GeneID:
109180056
NCBI-ProteinID:
XP_019185095
LinkDB
All DBs
Position
Un
AA seq
419 aa
AA seq
DB search
MAKPGRGRPASPSGSSRSPSRSRSRSRSPSRSRSYSGSGSRSSSHSRSRSRSYSSSSSHS
RSGSSRSPSPPRRKSPAEGSKRGRSPAAQPKKASPPPRKVSPIPESLVLHVEHLSRNVNE
NHLKEIFGNFGEVVRVQLVIDREVNLPKGYAYVEFKNRPEAEKALLYMDGAQIDGKVVHA
KFTLAERKKAFSPPKPVAPFKRDGPKSDNVTNDVDKDGPKRQREPSPRRKPLSPHRRRSP
IGRRGSPRREPDSPPRRSPVRRRDSPYRRADSPPTRRRLTPPPRGGRSPSPPRRYRSPPR
GSPRRIRGSPLRRRSPPPPPRRRSPRRARSPPRRSPIGRRRSRSPIRRPVRSRSRSISPR
RARGGPPSRRGRSSSYSSSPSARKGPRKISRSRSPKRPLRGKSPSNSSSSGSPPPSRKP
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaccaggccgaggccgtccggcgtcaccttccggttcttctcgctctccctcg
cggtcgcgttctcgttctcgctcaccgtcaaggtctcgttcttactccggctccggttct
cggtccagttctcactctcgatctcgctctaggtcctactcttcctcttcctctcattct
cgcagcggtagttcgcgcagcccgagcccacctcggagaaaaagtcctgctgaaggatca
aagcgaggtcgttcaccagcagcacagccaaaaaaagcttctccacctccaaggaaagtt
tctcctattccggagtctcttgtgctacacgtggagcaccttagtaggaatgtcaatgaa
aaccatttgaaagaaatatttggtaactttggtgaagttgtgcgcgtgcagctggtaatt
gatcgtgaagttaaccttcctaaaggatatgcatatgttgagttcaagaatagacctgaa
gctgagaaagccttactttacatggatggagcccagattgatggaaaagttgttcatgcc
aagttcacgctagctgagagaaagaaagctttttcacctcctaagcctgtggcacctttt
aagagagatggtcctaaaagtgataatgtcactaatgatgttgataaagatggtccaaag
cggcagcgggaaccctctcctcgccgaaaacctctctctccgcatcgaaggagatctcca
attggacgaagaggatctcctagacgagaacccgactctcctccccgtcggtctcctgtt
cgtcgtcgagattctccttatagacgtgctgactctccacctacaagacggaggcttaca
cctccaccaagaggagggcgttcaccctctccaccaaggcgttaccggtcaccacctagg
gggtctcctagaagaatccgtggaagtcctcttcgaagacgttctccccctcctcctcca
agaagacgttcaccccggcgagcacgtagtcctcccagacggtctcccatcggtcgcaga
cgtagccgctctcctataaggaggcctgtacgatcacgttcgagatctatttctcctagg
agagcaagaggaggaccaccttctagacgcgggaggtcatcatcttactcctcatcaccc
agtgctaggaagggaccacgcaaaatatctaggagtcgcagtcctaaaaggcctttaaga
ggaaaaagccccagcaacagtagcagcagtgggtccccaccaccatcacggaagccctag
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