Ipomoea nil (Japanese morning glory): 109180065
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Entry
109180065 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109180065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109180065
03009 Ribosome biogenesis [BR:
ini03009
]
109180065
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109180065
Spliceosome [BR:
ini03041
]
Complex A
U1 snRNP components
U1 related factors
109180065
Complex B
109180065
Ribosome biogenesis [BR:
ini03009
]
Eukaryotic type
Pre-60S particles
Helicases
109180065
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
109180065
NCBI-ProteinID:
XP_019185109
LinkDB
All DBs
Position
Un
AA seq
601 aa
AA seq
DB search
MYNPNYDSRYADSNSYRQRRSDLIGPPHIAGGAALSNSRGAPTPYGGPVVAPPRYSGFPS
FQTGGNEDRGGAGRGFDLSRGGRASGRGFDRGHGGRGGGRSGYDGGRSGGTGRHGAHGRG
RDDLDNISLPKQDFGNLVRFEKNFYSESPSVMAMTEHEVALYRARREVTVEGTDIPKPIR
MFHEANFPAYCLEVITRLGFVEPTAIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPALV
HVSAQPRLVQGDGPIVLVLAPTRELAVQIQEEAVKFGSQANIRITCIYGGAPKGPQIRDL
KRGVEIVIATPGRLIDMLESQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ
TLYWSATWPKEVERLARQFLHNPYKVIIGSPNLKANQSIRQIVEVVTDSEKYNRLTGLLK
EVMDGSRILIFVETKKGCDQITRQLRMDGWPALSIHGNKNQDERVWVLSEFKSGRSPVMI
ATDVAARGLDVKDIKCVINYDFPTCLEDYVHRIGRTGRAGAKGTAFTFFTHGNAKFAREL
VKILQQAGQIVPPQLSALACPGGFSSGASGNNFRSRGRGGFGNRGSISGSNTVPLGAKRH
W
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaccctaattacgattccagatacgctgactccaattcctatcgtcaacgcaga
agtgatctgatagggccaccgcatatagccggtggagctgccttaagtaatagccgtggt
gccccaactccttatggaggtcctgtggtggctccgccacgttattcagggttcccttct
ttccagactggtgggaatgaggatcgaggtggtgctgggcggggatttgatttgagccga
gggggtagggctagtgggagggggtttgatagaggacacggtggacgtggaggtgggaga
tctggatatgatggagggcgaagtggtggcacaggtaggcatggggcacatggcaggggg
cgagatgatttggataacatttcccttccaaaacaagattttggaaacttggttcgcttt
gagaagaacttctactctgagagtccatcagtgatggcaatgactgagcacgaggttgca
ctatatcgtgcaaggcgtgaggttacagttgagggcacggatatcccaaagccaattcga
atgttccatgaggcaaactttcctgcgtattgccttgaggttatcacaagattgggcttt
gttgaacccacagccatccaatcacaaggatggccaatggccttaaagggcagagatctg
attggcattgcagaaacaggttctggaaaaactttggcgtatctactgcctgctttggtt
cacgtcagtgcacaaccacgattggtgcaaggtgatggtcccattgtgctagtattagct
cctacaagagaattagctgttcagatccaagaagaagctgttaaatttggatcacaagca
aatataagaatcacatgcatttatggaggtgctccaaaaggacctcaaatacgcgatctt
aaaagaggagttgaaattgtcattgctactcctggtcggctgatagatatgctagaatct
caacatacgaacttgaaaagggtgacttatcttgttttggatgaggctgatcggatgttg
gatatggggtttgagcctcaaatcagaaaaattgtttcccagattcgaccagatagacaa
acactgtattggagtgcaacatggccaaaggaggtagaacgattggcaaggcagtttcta
cacaatccttacaaggtaatcattgggtctccaaatttgaaagcaaatcaatctataagg
caaattgttgaagttgttacagattcggagaagtacaacaggttgactggacttttgaaa
gaagtgatggatggaagcagaattctgatatttgtggagacaaagaaaggatgtgatcag
atcacaaggcaactaagaatggatggatggccagctttatccattcatggcaataaaaac
caggacgaaagggtctgggtactgtctgaattcaaaagtggtagaagtcccgtaatgatt
gccactgatgttgctgcacgcggtcttgatgtgaaggacataaaatgtgtaatcaattat
gattttcctacttgtcttgaggattatgttcataggataggaagaactggtcgggcgggt
gccaagggaactgcatttacattttttacccatggaaatgcaaagtttgccagagaactt
gttaagatccttcagcaagcaggtcaaattgttccccctcagttgtcagcattggcatgc
cccggtggtttcagctctggagcttcaggaaacaacttccgctctagagggcggggaggc
tttggaaaccgtgggtcgatttcgggatctaatacagttccacttggagcgaaaagacat
tggtag
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