Ipomoea nil (Japanese morning glory): 109180417
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Entry
109180417 CDS
T04663
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109180417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109180417
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109180417
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
DSE1_N
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
ASA1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_EIPR1
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_NOL10_N
Beta-prop_WDR41
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_SPT8
NBCH_WD40
WD40_RFWD3
PAC11
Beta-prop_Vps41
WD_LRWD1
Tricorn_2nd
Beta-prop_DCAF12
Beta-prop_SCAP
WD40_like
PROPPIN
Beta-prop_WDR11_2nd
WDR54
Motif
Other DBs
NCBI-GeneID:
109180417
NCBI-ProteinID:
XP_019185524
LinkDB
All DBs
Position
Un
AA seq
753 aa
AA seq
DB search
MMPAGDPSQHHHHHQQQQQQQQQQQQHHYHQQQQHHPQPPPPNHQHQHQHQQPYPFGDFP
RGPQPPPGPPQMMRQPSASSTTLNANGPPPPEYHHPSMPPGPPPPHHAYDGAAHADSYAA
KRIRKMGQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAVDMLPTGAYVDNPSTS
FAAKFVHTSLNKNRCSINRVVWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVR
SMVWSYNDNWMVTGDDGGAIKYWQTNMNNVKANKTAHKESVRDLSFCRTDLKFCSCSDDT
TVKVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHG
HKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF
VSGSYDGSIFHWLVGHETPQVEITNAHDSGVCDLAWHPIGYILCSGSNDHATKFWCRNRP
GDLARDKFSLNQQGTNDQNSALGYRPGNVGGPDAPSTPGAFGSGLIRNEGTIPGVGAAMP
LSLPSLDSSSQGDQKNPLSLSMPMGAPPLPPGPHPSLRAANQQQGYQQNMQQVPQQQMNS
MPLLPLQPPSHMPMMQHPHLPRPPPQLQPMNMQGVQSSMPGSMPVPSMQMPGPMGMQGNM
NQMGPPMPQGHFMGMNAQPGGMQAMQGPPNTGGNQMFQPSGGFNRPQGGQMPLMPGMNHF
QQSMPSNFGVQSGMPPPLPPGPPPHGQGQGGHQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgatgcccgccggcgatccatcgcagcaccaccaccatcaccaacagcaacaacaacaa
cagcagcagcaacagcaacaccactaccaccaacaacagcagcaccacccgcagccgccg
ccgcctaatcaccaacaccaacaccagcaccagcagccatatccgttcggagacttccca
aggggtccacaacctccgcccggtccgcctcaaatgatgcgtcagccctcggcttcctcc
actactctcaacgcaaatggccctccccctcccgaatatcaccacccctccatgccccct
ggacctcctcctcctcatcacgcttacgatggtgcagctcatgctgacagttatgccgca
aagagaataaggaaaatgggacaaagaagagctgttgactatactagtacagttgtacga
tatatgcagattcgcatgtggcaacgggattcaagggacagaactgtattgcaacctacc
ccagcagcagcagttgacatgctaccaacaggtgcctatgtagataacccgtccaccagt
tttgctgcaaagtttgttcatacatcactcaacaaaaaccgttgttcaattaatcgtgtt
gtgtggacacctactgggaggcgtcttattactggatctcaaagtggtgaatttactctc
tggaatggacagtcttttaactttgaaatgatacttcaggctcatgatcaggcagtcaga
tcaatggtatggagctacaatgacaactggatggtaactggtgatgatgggggtgctata
aaatattggcagacaaacatgaataatgtaaaggctaataaaactgcacataaagaatca
gtacgtgacttaagcttctgccggacagatttgaaattctgttcttgttctgatgatact
actgttaaggtttgggactttgctcggtgccaagaagagcgctcattatccggccatggt
tgggatgtgaagagtgttgattggcatcctacaaagtctttactggtgtcaggtggaaaa
gacaatcttgttaaactttgggatgccaagtcagggagagagttgtgctcatttcatggc
cacaagaatactgttctttgtgtcaagtggaatcaaaatggtaactgggtccttactgct
tcgaaggatcaaattataaagctttatgatataagggccatgaaggagcttgagtcattt
cgtgggcatcgaaaagatgtcacagctttggcttggcatccatttcatgaagagtatttt
gttagtgggagttatgacggttcaatatttcattggcttgtggggcatgaaactcctcaa
gttgaaattacaaatgcacatgatagtggtgtttgtgatcttgcatggcacccaataggg
tatattctttgcagtggcagcaatgatcatgcaacaaagttctggtgcagaaataggcct
ggggatttagctcgtgataaatttagcttgaatcagcaaggtaccaatgatcaaaactct
gctctaggttacaggccaggtaatgttggaggacccgatgctccatcaacgcctggagcg
tttggttctggtttgatacgaaatgagggcacaattcctggcgttggagctgcaatgcca
ctgtctcttccatcccttgattcatcctcacaaggagatcaaaagaatcctttatctcta
tcgatgcctatgggtgctcccccacttcctcccggtccccatccatcccttcgtgctgca
aatcagcagcaaggttatcaacaaaatatgcagcaagtcccacagcagcaaatgaactct
atgccgttgctcccactacaacccccatctcatatgcctatgatgcagcatcctcattta
cctcgcccacctccccagttacagcctatgaatatgcaaggtgtccaatcttcaatgcct
ggatctatgcccgttccatcaatgcaaatgcccggtccaatggggatgcaaggtaatatg
aaccagatgggtcctccaatgcctcaaggtcactttatgggtatgaacgctcaacccgga
ggaatgcaggcaatgcaaggccctccaaacacaggtggaaaccaaatgtttcagcccagt
ggaggcttcaacagaccgcaaggtgggcagatgccactcatgcccgggatgaatcacttt
cagcaatctatgccctcgaattttggagtgcaatcgggcatgccaccaccactccctcca
gggccgccgccacatggccaaggacaaggaggacatcaatag
DBGET
integrated database retrieval system
