Ipomoea nil (Japanese morning glory): 109180694
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Entry
109180694 CDS
T04663
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109180694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109180694
03019 Messenger RNA biogenesis [BR:
ini03019
]
109180694
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109180694
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109180694
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
SurA_N_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
109180694
NCBI-ProteinID:
XP_019185940
LinkDB
All DBs
Position
Un
AA seq
625 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSGPTHPTASVPGIQSSDGNGAAAAVPSANNLSTVASAPADAAH
DVGMGGNRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVY
KHSNEDIKECNMYKLGFCPNGPDCRYRHTRVPGPPPPVEEVLQKIQQVASHNFGYSNRFF
QNRNANFAPQVEKTQIGLGPNVVNQALKATMKGSPISQQQYQQQVQQPQQGSQAPNLLNA
PQNQANRSAIPLPQGTSRYFIVKSRNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVI
LIFSVNETKHFQGCAKMTTSIGGTANGGNWKYEHGTAHYGRNFSVKWLKLCELSFKKTGH
LRNPYSENLPVKVSRDCQELEASVGQQLASLLYLEPDSELMSISLEAELKREEEKANGVD
PECGNGIPDIVPFEDNEDEEEEESEEEDEGFDQSFGAAALGRGSSRGMAWPSMMPLGYRA
RPLPGMQGYTSGMMADSFSYGALTPRFSGDMMFHKRPLASGFGRSPFMGAAGLPRAGQPP
VSISQFPPPASGFSMMMGVGRSPFMGAAGLPRAGQPPVSISQFPPPSQLPPNSPAKGDQR
APVSDKNDINHRSRDGKFSWGARSR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggatgacggagatggaggtctgagcttcgacttcgagggcggtttagattcggggccc
actcaccctactgcatccgtacccggtatccaatcatccgacgggaatggtgccgccgcc
gccgtcccgagcgccaataacctatcaactgtcgcctcagcccccgcagacgccgctcat
gacgtcggaatgggcggcaaccggcggagcttccgccagacagtgtgccgtcactggctg
cggggtctttgtatgaagggagatgcctgcgggttcctacaccagtacgacaagtcccgc
atgcccgtttgccgcttcttcaggctctacggcgagtgccgcgagcaggactgcgtttat
aagcattccaatgaggacatcaaggaatgcaacatgtacaaattgggattttgtccaaat
ggtcccgactgccgatataggcacacaagggtccctggacctccacctcctgtagaagaa
gttcttcagaaaattcagcaggtggcatcccacaactttggctactcaaacagatttttc
caaaatcggaatgctaatttcgcaccgcaggtggagaagactcagattggtctaggacca
aatgttgtgaatcaagccctcaaagccacaatgaaaggatcccctatatcccaacagcag
taccaacaacaagttcaacagccccaacaaggtagtcaggctccaaatcttttgaatgca
ccgcaaaatcaggcaaataggagtgcaatacccctgcctcaaggaacatctaggtacttt
atagtcaaaagccgcaaccgtgaaaacctggagttgtcagcccaacaaggagtatgggca
actcaaagaagcaatgaggccaaactaaacgaagcatttgattcagtggaaaatgttatt
ttgatcttttcggtcaacgaaactaaacattttcagggttgtgcaaaaatgactactagc
attggtggtactgccaatggaggaaattggaagtatgagcatggaactgcgcattatgga
cggaacttttcagtcaaatggctaaaactatgtgaactgtcctttaaaaagaccggtcat
ctgagaaacccgtacagtgagaacttaccagtgaaggtaagcagagattgtcaagaactg
gaggcctctgttggtcagcaattggcttccctgttgtatctggaaccagatagtgagctt
atgtcaatctcccttgaagcagagttaaaacgggaggaggagaaagcaaatggagtcgat
cctgagtgcgggaatgggattccagatattgtcccatttgaagataatgaagatgaggaa
gaggaagaaagtgaggaagaggacgaggggtttgatcaaagttttggtgccgcagccctg
ggcagaggaagcagtaggggcatggcatggccttcgatgatgcctttaggatacagggcc
aggccactccctgggatgcagggctacacatctgggatgatggctgacagtttttcatac
ggtgcattaacaccaagattctctggtgatatgatgtttcataagcggcctctggccagt
ggatttggaagaagccctttcatgggtgctgcaggcctacctagagccggtcagccgcca
gtgagcataagtcaattccctcccccggccagtggattttcaatgatgatgggagtagga
agaagccctttcatgggtgctgcaggcctacctagagccggtcagccgccagtcagcata
agtcaattccctcccccatcacagcttcccccaaattctccggctaaaggagatcaaaga
gcaccagttagtgataaaaatgacataaatcacaggtcaagagatggcaagttcagttgg
ggggccaggtctagatga
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