Ipomoea nil (Japanese morning glory): 109181674
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Entry
109181674 CDS
T04663
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109181674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109181674
Spliceosome [BR:
ini03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109181674
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_SCAP
WD40_RFWD3
WD_LRWD1
Beta-prop_Nup120_160
eIF2A
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
109181674
NCBI-ProteinID:
XP_019187095
LinkDB
All DBs
Position
Un
AA seq
569 aa
AA seq
DB search
MDVDEENSVEPTETSSVITDNQNVASALGAISLQPVQPLAPPVIIPPIAPAIAPRPVVAP
PLAPLPVRPSVLKPPSVTQNGDMRASDSDSDHDESGSGAMAGSTQEYEISEESRLVRERQ
EKAMQELLLKRRAAALAVPTNDMAVRARLRRLGEPITFFGEREMERRDRLRALMARLDAE
GQLERLMKAHEDEEASASAAPTEEEEIQYPFYTEGSKSLLQARIEIAKYSILKSALRLDR
ARRKRDDPDEDLDAEIDLALNQAGSLVLDCSEIGDDRPLSGCSLSHDGEMLATCALNGVA
KLWSMPQVQKVSTLKGHTERATDVVFSPTSNHLATASADRTARLWNAEGSLLRTFEGHLD
RLARIAFHPCGKYLGTTSFDKTWRLWDVETGEELLLQEGHSRSVYGLSFHHDGSLAASCG
LDALARVWDLRTGRSILAFEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYT
IPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSSRDFKPVRTLSGHEAKVTSLDVGADG
QFVATVSHDRTIKLWSTKSSEKEKAMDID
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggatgaggaaaattctgtggaacctacagagacttcttctgttattactgat
aatcagaatgtagcttctgccctgggtgcaatttcacttcaaccagttcaaccacttgca
ccacccgtaatcatacctcctattgcacctgccattgctccaagacctgtagttgctccg
cctctggcacctctccctgttcgaccatcagtccttaagcctccttcagtgacacagaat
ggagacatgcgagctagtgattcagattctgaccatgatgaatcaggatcaggtgcaatg
gctggctctactcaagaatatgagatttctgaagagagcagactggtgagagagagacaa
gaaaaagccatgcaggagcttcttttgaagcgaagagctgctgctctggcagtccctaca
aatgacatggctgttcgagctcgtcttcgtagacttggtgaacccataaccttttttggg
gaaagggaaatggaaagacgagatcgactgcgagcacttatggcgagacttgatgcagaa
gggcagctggaaagactgatgaaagctcacgaggatgaagaagcttcagcttctgctgca
cccactgaggaggaggagattcaatacccattttatactgagggatcaaaatctctttta
caggcccgaatagaaattgcaaagtactctattctgaagtcagccttgcgtcttgatcgt
gctaggagaaaaagggatgatcctgatgaagatttggatgctgaaatagatttggcttta
aaccaggcaggaagcctggtccttgattgcagtgaaattggagatgatcgaccactttct
ggttgctcactatcacatgatggtgagatgcttgccacctgtgctctgaatggagttgca
aaattgtggagcatgcctcaagtacagaaggtttctacccttaaggggcacaccgagcga
gctactgatgttgtattctctcccacatccaatcatctagcaactgcatctgctgatcga
actgcaaggttgtggaatgcagaagggtctcttttgaggacatttgagggccatttggat
cgtctagcccggattgccttccatccatgtggaaagtacttgggcacaactagctttgac
aagacttggagattatgggatgtagaaactggtgaagaattgcttcttcaagaaggtcac
agtaggagtgtatatggactatcttttcaccatgatggttccttagctgcatcttgcgga
ctagatgctcttgctcgtgtttgggatcttaggacaggaagaagcattcttgctttcgaa
ggccatgttaaacctgttctaggtatcagtttttctcctaatgggtatcatttagctact
ggtggtgaagataatacttgccgaatttgggacctaaggaagagaaaatccctttacaca
atacctgctcactctaatctcatctctcaagttaagtttgaaccccaggaaggatacttt
ttggtgactgcttcatatgatatgacggctaaggtgtggtcatcaagagattttaagcca
gtgaggacactatctgggcacgaagccaaagttacatcattggatgttggggcagatgga
caatttgttgctacagtttcacatgatcgaactataaagctatggtctaccaaaagcagt
gaaaaggaaaaagcaatggatattgactag
DBGET
integrated database retrieval system
