Ipomoea nil (Japanese morning glory): 109181905
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Entry
109181905 CDS
T04663
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109181905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109181905
03012 Translation factors [BR:
ini03012
]
109181905
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109181905
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109181905
Translation factors [BR:
ini03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109181905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
ABC_tran
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
109181905
NCBI-ProteinID:
XP_019187418
LinkDB
All DBs
Position
Un
AA seq
1160 aa
AA seq
DB search
MHSRIGFLLGCTRRSSHSLLSAIFSYPAAHQVRTVGSHICRRALLSGGNVNLCRSQWRVF
WLGERRFCGYAVEQFSDDEYECDYESHPASSSVANIDEWKWKLSLLSRSEDQEVVSRDKR
DRRDYEQISNLAKRMGLYSEIYGKVVVISKVPLPNYRPDLDDKRPQREVVIPLSLQRRVE
GLLQEHLDRIHLSSEKSDGMPSESLAADKVENVTMDENPDSFLDDSVMEKVLQRRSLRMR
NLQRTWQESPEGHKMIGFRKSLPSFKEKERLLQAIACNQVVVISGETGCGKTTQLPQYIL
ESEIESGRGAFCSIICTQPRRISAMAVAERVATERGEPLGESVGYKVRLEGMKGKNTHLL
FCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSAT
LNADLFSGYFGGAPTIHIPGFTYPVRAHFLEDVLETTGYKLTSFNQIDDYGQDKMWKTQK
QLAPRKKKNQITGLVEDALNRSNFENYSARARDSLACWSPDSVGFNLIEAVLCHICRKER
PGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLVLTCHGSMATSEQKLIFERPPQNVRK
IVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASAKQRRGRAGRV
QSGECYHLYPQCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSAALQPPEPLT
VHNAIAFLKMIGALDEHENLTHLGKYLSVLPVDPKLGKMLVMGAIFHCFDPILTIVAGLS
VRDPFLLPQDKKDLAGSAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSA
QTLQAIHSLRKQFSFILKDAGLLEADTATNNKLSHNQSLVRAVICSGLYPGITSVVHREM
SMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGG
NLGIGATGGHLKMLDGYLEFFMDPSLAECYTNLKEQLDELVQKKLEDPGKDMHKEGKYLM
LAVQELVSGDQCEGRFVFGRESKKPKECGKNDRFTKDGTNPKSLLQTLLMRAGHHPPKYK
TKHLKTNEFRALVEFKGMQFVGKPKRNKALAEKDAAIEALAWLTHTSDKKGEEDDNSPPD
VTDNMLKLLGKRRRSKRRSG
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcattccaggatagggtttctcttgggatgcaccagaagatcttcgcattcacttctc
tcagctattttctcgtaccctgcggcccatcaagtccgaacagtcggttcacatatctgc
cggcgtgctttactttctggcggcaatgtgaacttatgcaggtcccagtggagggtattc
tggctgggggaacgccggttttgtggctacgccgttgagcagttctcggatgacgaatac
gaatgcgattacgagtctcatccggcatcatcatcagttgccaacattgacgagtggaaa
tggaaacttagcttactgtcgcgcagtgaggaccaagaagttgtatctagagataaaagg
gatagaagagactatgagcaaatatctaacctcgccaaaaggatgggcctatacagtgaa
atttatgggaaagtagtggttataagcaaggttcctcttccgaactacagaccagatctt
gatgataagcggcctcaaagggaggttgtcatcccactaagtttgcaaaggagagtggag
ggcttgcttcaggaacacctggacagaatccatctcagttctgagaagtcagatggtatg
cctagtgaaagtctggccgctgataaggttgaaaatgtaactatggatgaaaatccagat
tctttcttagatgactctgttatggagaaggttcttcaaaggcgaagcttgcgcatgcgc
aatttgcaaagaacttggcaggagtcacctgaaggccacaaaatgataggttttcggaaa
tctcttccatcatttaaggaaaaagaaaggttgcttcaagcaattgcttgcaatcaggtt
gtggtaatttctggtgagactggatgtggtaagactacccaactccctcagtacattttg
gaatctgaaattgaatctggtcgtggtgcattctgtagcataatttgtacgcagcctcga
agaatatctgcaatggctgttgcagaaagagtggctacagagaggggtgaacctcttgga
gaatctgttggttataaagtgcgattggaggggatgaaaggaaaaaatacacatcttctc
ttttgtactagtggtattttgctacggcggctattgagtgatcgaaatctggatggtatt
acccatgtctttgttgatgagattcatgagcgaggcatgaatgaagacttcttactgatt
gtgctaaaggatcttcttccaagacggcgagatttgagactgattttaatgagtgctact
cttaatgccgatttattttccggttattttggaggagcaccaacgattcacattccaggc
ttcacataccctgtaagagctcattttcttgaagatgtactggaaacgacaggatataag
ctgacttcattcaaccaaattgatgactatggccaagacaagatgtggaagacacaaaaa
cagctagcgcctcgaaaaaagaaaaatcagattactgggcttgttgaggatgctctcaat
agatcgaactttgagaactacagtgccagggcacgagattccttggcatgctggtctcct
gattctgttggtttcaaccttattgaggctgtcttgtgtcatatatgtcggaaggagaga
cctggtgctgtgttagtatttatgactggttgggaagatattagctgtttgagggatcaa
cttaaagctcatcccctcttgggtgaccccaacagagtattggtgcttacatgccatggt
tcaatggcaacttcagagcagaaactcatatttgagaggccacctcaaaatgttcggaaa
attgtacttgctacaaatatggctgaggcgagtattactattaatgatgtagtgttcgta
gtcgattgtggaaaagcaaaggagacaacttatgatgcgctcaataatacaccttgtttg
ctaccttcgtggatatcacaagcctctgctaaacagagaaggggtagggctggtcgtgtg
cagtcaggcgagtgctaccacttgtacccacaatgtgtttatgaagcttttgcagagtat
caattacccgaacttctaagaactcctctaaattctctttgcctgcaaataaagagtttg
caagttggaagtattgcagaatttctctctgcagctcttcaaccaccagaaccattgacg
gtacacaatgctattgcatttttgaagatgattggtgcattagatgaacatgagaatctt
acgcatctgggtaaatatctatcggttcttcctgtggatcctaagcttgggaaaatgcta
gttatgggtgctattttccattgctttgatcccattttgaccattgttgctggtcttagt
gtcagggatccttttcttttgcctcaggataagaaggatttagcagggtcagcaaagtcc
agattctcagcaaaggactatagtgaccacatggctcttgtccgtgcctatgaaggatgg
aaggatgctgaaagagaaggatctgcttatgagtattgttggagaaacttcctttcagct
caaactcttcaagctattcattcccttcgcaagcagttctccttcatcttaaaagatgct
ggattgcttgaagcagacactgcaactaataacaagctaagtcacaatcaatcattagtc
cgtgctgtcatatgctctggtttatatcctggaattacttctgtagtgcacagagagatg
tcaatgtctttcaagacaatggatgatggtcaagttttgctatatgcaaattctgtgaat
gcacgctatcaaacaattccatacccttggttggtgtttggtgaaaaggtgaaggtcaat
actgtcttcatacgcgattctactggagtatctgattcaattttaatcctgtttgggggt
aatcttggcattggtgctacgggtgggcatttgaaaatgttggatggttatctggaattc
ttcatggatcccagtttggccgagtgttacacgaacctcaaagagcagcttgatgagctt
gtgcaaaagaagctcgaggatcctggcaaggacatgcacaaggaaggtaaatacctcatg
cttgccgttcaggaactggtctcgggggatcaatgtgaaggacgatttgtgtttgggcga
gagagcaagaagcctaaagagtgtggtaagaatgataggtttacaaaggatgggacaaac
cccaaaagcttattgcaaactcttttgatgagagctgggcaccaccctccaaaatataaa
acaaagcatctcaagacaaacgagttcagggcactggtggagttcaagggaatgcagttc
gtgggtaaaccaaagagaaacaaagctctggccgagaaggatgctgcaatcgaggcattg
gcatggttaactcacactagtgacaagaaaggcgaagaagacgacaattccccacccgat
gtgactgacaacatgctgaaactcctcggtaagcgccggaggtcaaaacgacgctcaggt
tga
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integrated database retrieval system
