Ipomoea nil (Japanese morning glory): 109182256
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Entry
109182256 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03013
Nucleocytoplasmic transport
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109182256
03015 mRNA surveillance pathway
109182256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109182256
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109182256
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109182256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
109182256
NCBI-ProteinID:
XP_019187922
LinkDB
All DBs
Position
Un
AA seq
497 aa
AA seq
DB search
MADNSTSVAASAAMEETKPQLSKSWADVADETEEAEASSTSDVKPSSELNMDSLAMDESK
SVYKTLSDPDDASIEAVTSGDTLYKSAKRFEDLNLTPELLKGLYVEMKFERPSKIQEISL
PMILTPPNKNLIAQAHNGSGKTTCFVLGMLSRVDPKLAAPQALCICPTRELAIQNMEVLL
KMGKYTGITSELAIPADAANYIPINKRPPVTAQVIIGTPGTINKWVIAKKLGASCMKILV
FDEADHMLAESGFQDDSVKIMKAIVRGKADCQVLLFSATFNEAVKGFVTKIVKDLFVKDY
NQLFVKKEELSLESVKQYKVQCPDELSKVMVIKDKILELASKVGQTIIFVRTRNSANMLH
KSLVDYGYEVTTIQGALKQEDRDKIIKEFKEGLTQVLISTDILARGFDQSQVNLVVNYDL
PVQYGHWSDPDYEVYLHRIGRAGRFGRKGAVFNLLCNDTDTMLMSKIENHFNSPVAEVTS
WQSDTEFEAALKTAGLL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacagtacttccgtcgccgcctcggcggcgatggaggagacgaaacctcag
ctgagtaagagttgggccgacgtagcagacgagacggaggaagcggaggcatcatcgacc
tccgatgtgaaacccagttccgaacttaatatggactctctagccatggatgagtccaaa
agtgtctacaaaaccctctctgaccctgacgacgccagtatcgaagctgttacatctggg
gatactttgtataaatctgccaaaaggttcgaagacttgaacttgactccggagttgctg
aagggattatatgtagagatgaagtttgagaggccgagtaaaattcaggaaatcagtctg
cctatgatactcactccgccgaacaagaatcttattgcccaggctcataatggatccggt
aagacaacgtgctttgtgcttggaatgttgagccgagttgatccgaagctcgctgcccct
caggctctctgtatttgtcccactagagaacttgccattcagaatatggaagttctgttg
aagatggggaagtatactggtataacatcagaattggcaattccagcagatgctgccaac
tatattccaataaataaacgacctcctgttacagctcaagttataattggtacccctgga
accataaataagtgggtcatagcaaagaagctgggcgcaagttgtatgaagattcttgtg
tttgatgaggcagaccacatgttagcagagagtggctttcaggatgattctgtaaaaata
atgaaggctattgtcagaggcaaagccgattgccaggtgctcctgttttctgcaaccttc
aatgaagctgtcaagggttttgtgacgaaaattgtcaaagacctctttgtaaaagattac
aatcagctctttgtaaagaaggaagaactttcactggagtctgtgaagcagtataaggtg
caatgccctgatgaactttcaaaggtcatggtgattaaggataaaatacttgaattggcg
tcaaaggtggggcagacaattatctttgttcgtaccagaaatagtgctaatatgttgcat
aagtctcttgttgactatggctatgaggtaacaacaattcaaggtgctttgaagcaagaa
gacagagacaaaattattaaggagttcaaggaaggtcttacacaagttcttatatcaacg
gatattcttgctcggggatttgaccaatcacaggtcaatttggttgtgaattatgatctt
ccggtgcaatatggccattggtcagatccagattatgaggtatacttgcatcggattggc
agagcaggacgttttggccgcaaaggtgctgtgtttaacctgctttgcaacgatacagac
accatgctaatgtcgaaaattgagaaccacttcaatagtcccgtggccgaggtgacatct
tggcaaagtgatacagaatttgaggctgctttgaagaccgctgggctactctaa
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