Ipomoea nil (Japanese morning glory): 109184036
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Entry
109184036 CDS
T04663
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109184036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109184036
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109184036
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_10
TPR_12
TPR_1
TPR_8
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
109184036
NCBI-ProteinID:
XP_019189622
LinkDB
All DBs
Position
Un
AA seq
865 aa
AA seq
DB search
MDSSGSSSSMAMSNNREAPSSSPAVAATAEDEVAPSVASGLAKEAALLFQSGKFKDCIRV
LNQLFQNKEGDPKVLHNIVIAENSQDGCSNPKRLIEELNNFKKQNEHVVGPSGDRAEATG
NVGIKTVAGIKGTNSSANQDSSLRSSQAVYTDEFDPSVAMYNLAVSWFHLHEYAKAFSIL
EALFQNIEPIDEDTAKHICLLLLDVALLSQNARRSMDVIGYVEKVFCNNSSTNQAASGNS
TQPASTIVAKSVSVSNNSTVPDAPASDSVVTAINSEGSLARSLSEERLEDDTLHLISSIE
MSGQNPPRQPGIQPSNDLLKNQADESISTNDMRIKLHLCKVRFLLLTRNVKAAKREVKMA
MNMARGKDYSMALYLKSQLEYARGNHQKAVRLLMASTNRTEMGISSIYYNNLGCIYYRLG
KYHSSAVFFSKALSSSSPLRKEKPLKLSNISQDKSFLIVYNCGMQYLACGKPLQAACCFY
KARHVFSNSPLLWLRIAECCLMALEKGLLKSTTSVSSDKSGFEVHVIGKGKWRQLVIDDG
LSRIGQGNSIGGEDLALGDGQPNLSMIVARQCLLNALVLLSRSEPKDGVTRLPNAVLTEE
NESREAVLSKTTNYKNASGSDTKASNAAMSGQINANGELKEQKGGNSQNVSLLSSIPDYE
DICRKENQMLEQALLADLAYVELELGDPLRALSTARSLLKLIECSKIYTFLGNVYAAEAL
CLLSRPKEAAEHLSMYLSEIKGVEQPFSQEDVEAWRVEKVVDSEESNGGSTTMNESQGFV
FLKPEEARGILFTNLAAMSAVQGDLDQAHAYALAAAAIIPRSTKAILTAIYVDLLQGKTK
EAVAKLRKCSSVRFIHNSLPTNGSL
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggattcatcgggttcctcttcctcaatggcgatgtcgaataatcgagaagccccttcc
tcgtcaccagctgtggcggcaactgcggaagacgaggttgcaccctctgttgcctccgga
cttgccaaggaggccgctttgcttttccagtcggggaaatttaaggattgcattagagtt
ttgaatcagctctttcagaacaaagaaggcgatccgaaggttcttcataacatagtcatt
gcggagaactctcaagatgggtgttcaaatcctaagagacttattgaagaacttaataat
tttaagaagcaaaacgaacatgttgttggtccatctggggaccgtgctgaggctactggc
aatgttggtattaaaactgtggctggaattaaaggaacgaatagctcagcaaaccaggat
tctagcctacgtagttctcaagctgtttacactgatgaatttgacccctcagttgcaatg
tacaacctagcagtttcttggtttcatctgcatgagtatgcaaaagcattctctattctg
gaagcattgtttcagaatattgaaccaatagacgaggatactgcaaaacatatttgtctt
ttgttattggatgttgcattactttcccagaatgcaagaagatcaatggatgtgattggc
tatgtggagaaggtcttttgtaataatagttcgacgaatcaagctgccagtgggaactca
acacaacctgcttcaaccattgtggcaaaatctgtttcggtctccaacaattcaactgtt
cctgatgcacctgcttctgattctgtagttacagcaattaactccgaaggttctttagct
agatccttatctgaagagcgtcttgaagatgatacattgcatttaatatcatcaattgag
atgagtgggcagaacccaccaagacaacctggtatacaaccttcaaatgatcttctaaag
aaccaagctgatgagtccatctcaacaaatgatatgagaattaagctgcacctttgcaag
gttcgctttcttctccttactagaaatgtcaaggctgcaaaacgtgaagttaagatggcc
atgaacatggcacgtggcaaagattattctatggcactttatttgaagtcccagctggaa
tatgctcgtggaaatcatcaaaaagcagtcagactgttgatggcttcaactaatcggaca
gaaatggggatttctagcatatattataacaaccttggttgcatctattatcgacttggc
aagtatcactcgtctgctgtattcttttcaaaggctctgagtagtagctcacctctacga
aaggagaagcctctgaagctctcaaacatctctcaagataagtctttcttgatagtatat
aactgtggtatgcagtacttggcttgtgggaagccactacaggcagcatgctgtttttac
aaggctagacatgtattctctaacagtcctcttttatggctgcgaattgctgaatgttgt
ctaatggctcttgaaaagggactcctgaagtctaccacatctgtttcttctgacaaatct
ggatttgaagtccatgttattggaaagggaaaatggaggcaacttgttatagatgatggg
ttatcaagaattggacagggtaattccataggtggggaagatttggcacttggtgatgga
caacctaatctctctatgattgttgctcggcagtgccttttaaatgctttggttttgttg
agccgttctgagccgaaagatggtgtgactagattgcccaatgctgttctgacagaggaa
aatgaatcaagagaagctgtattatctaagacaacaaattacaaaaatgcatcaggcagt
gatactaaggcatctaatgcagcaatgtcaggtcagattaatgcaaatggggaactgaaa
gagcagaagggtggaaatagtcagaatgtctccctcctgagctccattccagattatgaa
gatatttgtagaaaagaaaatcagatgcttgagcaagcccttttggcagatctggcttat
gtagagcttgaactgggggatccattgagggctctatcaacagcaagatctctattgaaa
ctcattgaatgttccaagatatataccttcttgggtaatgtctatgcagctgaggctcta
tgcttgcttagccggccaaaggaggctgcggaacatttgtcaatgtatctttctgagatt
aagggtgttgaacagccatttagtcaggaggatgtggaagcatggagagtggagaaggta
gtggattcagaggagtcaaatggtggctcaacaactatgaacgaatctcaaggttttgtg
ttccttaaaccagaagaggctcgaggtattctgtttaccaacttggctgccatgtctgca
gttcagggggatcttgaccaggcgcatgcatatgcactagcagcagcggcaatcataccc
aggagtaccaaagctatactcactgcaatttatgttgaccttttgcaagggaagacaaaa
gaagctgttgccaagttaagaaaatgtagttctgttagattcattcacaacagcctaccc
acaaatggttctttatga
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