Ipomoea nil (Japanese morning glory): 109186532
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Entry
109186532 CDS
T04663
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109186532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109186532
03041 Spliceosome [BR:
ini03041
]
109186532
03036 Chromosome and associated proteins [BR:
ini03036
]
109186532
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109186532
Spliceosome [BR:
ini03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109186532
Complex B
109186532
Complex C
U2 SnRNP specific factors
109186532
Chromosome and associated proteins [BR:
ini03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
109186532
TFTC complex
109186532
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
109186532
NCBI-ProteinID:
XP_019192098
LinkDB
All DBs
Position
Un
AA seq
1212 aa
AA seq
DB search
MYLYSLTLQKPTGILCAINGSFSGGKVQEIVVARGKVLDLIRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNCFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITYSICGVDCGFDNPI
FAAVELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDIRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSSTLMETDEGFQPVFFQPRKLKNLVRIDQVESLMPIMDMKVINLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSLQSVSSPPDSLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RKFVLQPKRKLAVIIESDQGALTAEERENAKKECFADAGMGVNGNSEKMENGGDEEDSED
PLSDEQYGYPKAESDKWVSCIRILDPRTTQTTCLLELQDNEAAFSICTVNFHDKEHGALL
AVGTTKGLQFWPKRSFEAAYIHIYKFKEDGRVLELLHKTQVEEVPLALCQFQGRLLAGVG
PVLRLYDLGKKRLLRKCENKLFPSTITSITTYRDRIYVGDIQESFHYCKYRRDENQLYIF
ADDTVPRWLTSTCHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNG
APNKVEEIVQFHVGDVVSCLQRASLIPGGGECVIYGSVMGSVGAMLPFTSRDDVDFFSHL
EMHLRQENPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEI
LKKLEEIRNKII
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctccagaagcccaccggcatactctgtgccatcaacggg
agcttctccggcggaaaagtgcaagaaattgtagtcgcccgtggcaaagtcctcgacctt
atccgccctgatgacaacggtaagctccaaaccctcctctccgttgaaatcttcggtgcc
attcgttcgttagctcagtttcgacttacgggtgctcagaaagattacattgtggtgggg
tcggattcgggaaggatagtgattttggagtataataaggagaagaattgtttcgataaa
gttcatcaggagactttcgggaagtctgggtgtaggagaatcgttccgggtcagtacctg
gcgattgacccaaaaggtagggctgttatgatcggggcttgtgagaaacagaagcttgtt
tatgttttgaatagggatactgcagctaggttaacgatttcctcacctctagaagctcac
aagagccatacaataacatactcgatatgtggtgttgattgtggattcgataaccccata
ttcgccgctgttgagttggattattctgaggctgatcaggatccaactggccaagctgcc
agtgaggctcagaaacatttgacattttatgagttggacttggggcttaatcacgtctcc
aggaagtggtcagaacaggttgataatggtgctaaccttcttgtgactgttcctggtggt
ggggatggaccaagtggtgtgcttgtgtgtgccgaaaattttgttatatataagaaccaa
ggtcatcctgatattcgggctgtgattcctaggcgtgcggatttgcctgctgagcgaggt
gttctgattgtttcagctgctatgcataagcagaagtcaatgtttttctttcttttgcaa
acggagtatggggatatttttaaggttactttggatcatgacaatgacagggttaaggag
ttaaagatcaagtactttgatacaattccagtcacgtcttcattatgtgttttgaagtca
ggtttcctatttgctgcatcagagtttgggaaccatgctttgtatcagtttcaggcaata
ggagatgatccagacgttgaagcttcatcatctacacttatggaaacggatgaaggtttc
cagcctgtatttttccagccaaggaagctgaagaatcttgttaggattgatcaagtggag
agcttgatgccaatcatggatatgaaagtgataaatctttttgaggaagagactccccaa
atattttcactctgtgggagaggtcctcgatcatctttgcggatactgagaccaggtttg
gctgttagtgaaatggctgtttcacagcttcctggtgtcccaagtgccgtatggactgtg
aaaaagaatgtcaatgatgaatttgatgcttatattgtcgtctcatttgcaaatgcaact
cttgtgctttctattggtgagactgttgaagaagttagtgatagtggatttctagatact
actccatcactctctgtctcactgattggagatgactcccttatgcaagttcaccctagt
ggcattcggcatattagagaagatgggcgcattaacgagtggagaactcctgggaagaga
actattgttaaggttgggtctaatagactccaggtggtaattgccctgagtggaggtgag
cttatatattttgaagttgacatgactggtcagttgatggaggttgagaagcatgagatg
tcaggtgatgtagcttgtttggacattgcccctgttcctgaaggcagacagaggtctcgc
ttccttgctgttggatcatatgacaacaccatccgcattctgtcactcgatccggatgac
tgtatgcagatactgagtttgcaaagtgtgtcttcccctccagactctctcctctttcta
gaagttcaggcttctgttggtggggaggatggtgcagaccaccctgctagtctctttttg
aacgctggtttacaaaatggggttttgttcagaacagtagtggatatggtaacaggtcag
ctttcagatgctcgttcaaggttcttagggcttagggctcctaagctcttttctattatt
gtgaggggaaggcgtgcaatgctctgcttgtccagtagaccctggcttggttatattcac
caaggacatttccttttaacaccactatcatatgaaacacttgaatatgcagcatcattt
tcatctgatcagtgtgctgaaggtgtagttgctgttgctggtgatgccttgagggttttt
actattgaaagattgggggaaacattcaatgaaacagctatacctttgaggtatacccca
aggaaatttgtgcttcaacctaaacggaagctagcagtaatcattgagagtgatcaagga
gcacttactgcagaagaacgtgaaaatgctaaaaaggagtgctttgctgatgctggaatg
ggggtcaatggcaattcagagaaaatggagaatggaggtgatgaagaggatagtgaggat
ccactctctgatgagcagtatggttatccaaaggcagagtcggacaagtgggtctcctgc
atcagaatccttgacccaaggacaactcagaccacttgtctgcttgaacttcaggacaat
gaagctgcattcagtatatgcactgtaaatttccatgataaggagcacggagcacttctt
gctgttggtaccactaagggacttcaattttggcccaagcgatcatttgaagctgcatac
atacatatttacaaatttaaggaagatggaagggtacttgaacttttgcacaagacacaa
gtggaagaggttcctcttgcattgtgccagttccaaggaagactattggctggggttgga
cctgtccttaggttgtacgatttggggaagaaaagactcctaaggaagtgtgagaataag
ctcttccctagcacaatcacatctattactacctaccgtgatcgcatttatgttggtgac
attcaagagtcattccactattgcaagtatcgccgcgatgagaaccaactttacatattt
gctgatgacacagttccaagatggcttacttcaacatgccatgtggactttgacaccatg
gcaggggcagacaagtttgggaacatctattttgtgcgtctgccacaggatgtgtcagat
gagattgaagaagatccaactggcgggaagataaaatgggaacagggaaagctgaatgga
gctcccaacaaggtcgaagagattgtgcagtttcatgttggtgatgtggttagctgcctg
caaagggcatcacttattccgggaggtggggagtgcgtcatctatgggagtgttatgggg
agtgtaggtgcaatgcttccatttacctctagggatgatgttgacttcttctctcatttg
gagatgcatttgaggcaggagaacccaccattgtgtggcagagaccatatgggctacaga
tctgcatacttccctgtcaaggatgtgattgatggagacttgtgcgaacagttcccaact
ttgcctatggacatgcagcgcaaaattgcggatgagctagatagaactccaggggagatt
ttgaagaaactggaagaaataaggaacaaaatcatatga
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integrated database retrieval system
