Ipomoea nil (Japanese morning glory): 109187240
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Entry
109187240 CDS
T04663
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03020
RNA polymerase
ini03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109187240
09124 Replication and repair
03420 Nucleotide excision repair
109187240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109187240
03400 DNA repair and recombination proteins [BR:
ini03400
]
109187240
Enzymes [BR:
ini01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109187240
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109187240
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109187240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zn_ribbon_IS1595
MRNIP
Motif
Other DBs
NCBI-GeneID:
109187240
NCBI-ProteinID:
XP_019192937
LinkDB
All DBs
Position
Un
AA seq
1202 aa
AA seq
DB search
MYEENEYADEPLERNIERDEEAEYEEDDEGAEIGQEDAWAVISAYFEEKGLVRQQLDSFD
EFIQNTMQEIVDEASYIEIRPEAQHNPGRQSDFVETIYRIKFTQIYLSRPMMTESDGETN
TLFPKAARLRNLTYSSPLYVDVEKEVIKRGHDYEEVTESQEFTKVFIGKIPIMLRSSYCS
LYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSTNHVYVFKKRQPNKYSYVAEV
RSIAEGQNKSPSSMFVRMLSKATTKGGSSGQYIYATLPYIRTEVPIIIVFRALGFVADKD
ILEHICYHFSDPPMMELLRPSLEEAFLIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEIL
QREMLPHVGTREYCETKKAYYFGYIINRLLRCALGRRPEDDRDHMANKRLDLAGPLLAGL
FRMLFRKLTRDVRSYVQKCVDSGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRA
GVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVK
NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVILEATKIFVNGSWVGIHRNPDLLV
KTLRQLRRQVDVNTEVGVVRDIPLRELRLYTDYGRCSRPLFIVDKKRLLIKKKDIMMLQE
RESPEECGWHDLVAKGFIEYIDTEEEETTMIAMTINDLANSRRNLEDLQPYTHCEIHPSL
ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR
AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG
TLVKEEFRKPDRENTMGMRHGCYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQP
ARYTKRDHSTSLRHSETGIVDQVLMTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGT
IGMTYTQDDMPWTLEGVTPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDATPFTD
VTVDNISKALHKCGYQMRGFERMYNGHTGRLMSAMIFLGPTYYQRLKHMVDDKIHSRGRG
PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCRHCGII
ALANLKKNSFECRGCSNKTDIIQVYIPYACKLLIQELMSMAISPRMLTMDIETLHEKMKN
AR
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggagaatgaatacgcggatgaacctttagagaggaatattgaaagagacgaa
gaagcagaatacgaggaggacgatgaaggtgccgaaatcgggcaagaggatgcatgggcg
gtgatcagtgcatattttgaggagaaaggtctggtgaggcagcagctcgactccttcgat
gagttcatacagaacactatgcaagaaatcgtcgacgaggcttcttacattgagatccgc
cctgaggctcagcataatcccggccgtcaatccgactttgttgagacaatttataggatc
aagtttactcagatatacctgagtaggcctatgatgacagagtctgatggggagactaat
accttattcccaaaggctgcgaggttgaggaacctcacatactcatcaccattgtacgta
gatgtcgaaaaggaagtgataaagaggggccatgactatgaagaagtcacagagagtcag
gaatttaccaaggttttcattgggaagattcctataatgcttaggtcgagttattgcagc
ttgtataacctatctgagaaagacttaacagagttgggagagtgtccttatgatcaaggt
ggatacttcatagttaatggtagtgaaaaggttctgattgctcaggaaaagatgagcacc
aaccatgtctatgtgttcaagaaacgacagccaaacaaatattcatatgtagctgaagtc
cggtctattgccgagggccaaaacaagtcgcctagcagcatgtttgtcaggatgctttcc
aaagcaactaccaaagggggatcctcaggacaatatatatatgctactcttccttacata
aggactgaagtgcctattataattgtctttcgagcattaggtttcgtagcagataaagat
atattagagcatatatgctatcactttagcgatcctccaatgatggaactgcttcgccca
tctttggaagaggcattcttgattcaaaaccagcaggttgctcttgactatattgggaaa
agaggatcaacagttggggtcaccaaagagaaaaggatcaagtatgctaaagagattctg
caaagggaaatgcttccacatgttggtactagagagtattgtgagactaaaaaggcctac
tattttggatacatcatcaatcggcttttacgatgtgcacttggccgaaggccagaagat
gacagggatcacatggcaaataagaggctggaccttgctggtcctttgttggcaggctta
ttccgaatgttattcagaaagctaaccagagatgtgagatcatatgttcaaaagtgtgtt
gacagtgggaaggatgtaaatttgcaatttgccattaaagcaaaaactattacaagtggg
ctcaagtactctcttgcaactgggaactgggggcaagcaaatgcagctggtacaagggca
ggagtttctcaggttttgaatcgcttgacattcgcctcaaccctttcccatttgcgcaga
ttgaactcacccatcgggcgtgagggtaaattagcaaaacctcgacaattacacaattct
cattggggaatgatgtgtccagcagaaacacctgaaggacaagcctgtggactggtaaag
aaccttgcacttatggtctacataactgttggatcagcggcaaatcccatactagagttt
ttggaggaatggagcacagaaaattttgaggaaatatctcctgcagttatccttgaagct
accaagatttttgtaaatggctcctgggttggcattcatcgtaaccctgacttgttagtg
aagacactgagacagttgaggagacaggtagatgtcaacactgaagttggagtggttcgt
gacataccattgagagaactccgcttatacacggactatggccgttgtagtcgtccgtta
tttattgtggataaaaaaagactactgatcaagaagaaagatattatgatgctgcaggaa
agagagtcccctgaggaatgtggctggcatgatcttgtggcaaaaggatttatcgagtat
attgatacagaagaagaggagactacaatgatagcgatgacaataaatgaccttgcaaat
tcaaggagaaatctagaggacttacagccttacacacactgtgaaattcatccatcgctt
atattgggggtttgcgcatcaattataccttttccagatcacaaccagtcccctcgtaat
acttaccaatcagccatgggaaagcaagcaatgggaatttatgttacaaattaccagttt
cgaatggatacattggcttatgttctttactatcctcagaagcctcttgtcactacccgt
gcaatggaacatttgcattttagacaactcccagctggcattaacgctattgttgcaatt
tcctgttattctggatacaaccaagaagattctgtcatcatgaaccaatcttcaattgac
cgtggcttcttccgatctctctttttccgctcatacagggatgaagaaaagaagatggga
acacttgtgaaagaggaatttcggaaacctgatcgggagaataccatgggaatgagacat
ggatgctatgataaattggatgatgatgggtttgcgcctcctggaacaagagtttctggt
gatgatgtgattattggaaagaccactcccatttctcaggatgatgctcaaggacaacct
gccagatatacaaaacgcgaccatagtactagtctacgccatagtgaaacaggaatcgtg
gatcaggttctgatgaccacaaatgcagatggtttgagatttgtgaaaataaggatgaga
tctgtgcggatacctcaaattggagacaaattcagcagccgacatgggcagaagggaacg
attggaatgacttatactcaagatgacatgccatggacacttgaaggcgtcactcctgac
atcattgtcaacccgcacgctattccctctcgtatgactatcggtcagcttgtcgagtgt
gtcatgggaaaagttgcagctcacatgggaaaggaaggagatgccaccccttttactgat
gttactgtggataacatcagcaaagctcttcacaaatgtgggtatcagatgcgtgggttc
gagagaatgtacaatggtcacacagggcgattgatgagcgcaatgatattcctgggaccg
acgtattaccagagactgaagcacatggtggatgacaagatccattctcgtggccggggt
cctgtccagattctcaccaggcagcccgcagaagggaggtctcgggatggagggctgcgc
tttggggaaatggagcgcgactgcatgatagcacatggagcagcacactttctgaaagag
aggttgttcgaccagagtgatgcttacagagttcatgtatgcagacactgcggtataatt
gcactcgctaacctcaagaaaaactctttcgaatgtagaggctgcagcaacaaaacagat
atcattcaggtctacattccatatgcatgcaagcttctcatacaagaactcatgtcaatg
gcaatttccccaaggatgcttacaatggatatagagacactacatgaaaagatgaaaaat
gccagatag
DBGET
integrated database retrieval system
