KEGG   Ipomoea nil (Japanese morning glory): 109187404
Entry
109187404         CDS       T04663                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    109187404
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ini04121]
    109187404
   03036 Chromosome and associated proteins [BR:ini03036]
    109187404
Enzymes [BR:ini01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109187404
Ubiquitin system [BR:ini04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109187404
Chromosome and associated proteins [BR:ini03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     109187404
    Noncanonical PRC1 (PRC1.1)
     109187404
    Noncanonical PRC1 (PRC1.3/1.5)
     109187404
    Noncanonical PRC1 (PRC1.6)
     109187404
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX zf-RING_5 zf-RING_11 zf-RING_4 zf-Nse zf-RING_6 zf-C3HC4_5 TRAF3_RING zf-rbx1
Other DBs
NCBI-GeneID: 109187404
NCBI-ProteinID: XP_019193134
LinkDB
Position
Un
AA seq 172 aa
MAAERRDENEEQEGEFPLKNGGSGSDEMGTDSAVILDDLMESRTEIRDWLECPICLGIIK
KTRTVVECMHRFCGDCIEHVMEKGMNDCPICRCHIPSRASLKDDANFDGLVGAVCKLVEK
CGYNKRKAPTDDDECGKQTKVRRIIGAPSNQTSSSSDSRFSEPKQDRVLRRE
NT seq 519 nt   +upstreamnt  +downstreamnt
atggcagcagagaggagagacgaaaatgaggagcaagaaggagaatttccccttaaaaat
ggaggttccgggtctgatgagatgggcaccgactctgctgtaatcctggatgatttgatg
gaatcacgaactgaaatccgtgactggcttgaatgcccaatatgcctaggcatcatcaag
aaaactcgtaccgtggtggaatgcatgcaccgcttttgcggggactgcattgaacatgtt
atggaaaaggggatgaatgattgccctatttgccgctgccatattcccagccgtgcttca
ttaaaagatgatgcaaattttgatggtttggttggggctgtatgtaaacttgttgagaag
tgcggatataataagagaaaggctccaactgatgatgatgagtgtggaaaacaaaccaaa
gtcaggagaatcataggagctccgtccaaccaaacgtcttcctcctctgatagcagattc
tctgagcctaaacaagacagggttttgcggagagaatag

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