Ipomoea nil (Japanese morning glory): 109187537
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Entry
109187537 CDS
T04663
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109187537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109187537
03012 Translation factors [BR:
ini03012
]
109187537
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109187537
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109187537
Translation factors [BR:
ini03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109187537
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
R3H
HA2_C
ATPase
Ank_2
AAA_19
AAA_22
HA2_N
Ank_5
nSTAND3
ResIII
Rad17
NPHP3_N
AAA_7
Motif
Other DBs
NCBI-GeneID:
109187537
NCBI-ProteinID:
XP_019193302
LinkDB
All DBs
Position
Un
AA seq
1202 aa
AA seq
DB search
MDTKTAAGGSGKGGKKSKKANNGAWPKGVDEAARIRISEILQRFRSSNEEVYKFGSNLNN
FERAAVHMLCRKMGMRSKSHGHGNARQVSVFNKGKKIDSQRGNETLTCLKFSKGAKTILN
DLFSRYPPGDEETTSYMSEKHNKKAGKLFGLNDDIFRKPAMDKSDIAKKVELLASRVEKS
QDLRQTLKRRSKLPIASFKDIITSSIESYQVVLISGETGCGKTTQVPQYILDHMWAKGET
CKVVCTQPRRISATSVSERISTERGENLGDTVGYKIRMESSGGRHSSIVFCTNGVLLRIL
VNTSKLNKKALQRGKDAMSDITHIIVDEIHERDRFSDFMLAIIRDMLPLYPHLRLILMSA
TMDEERFSKYFGGCPIIRVPGFTYPVKTFYLEDVLGFVKSVENNHLDNTTASLNSKDSVL
TEEYRVALDEAINLAATDDEIDPLLDIISSEAIPAVINYQHSLIGVTPLMVFAGKGSING
LCTLLSLGADCHLKTKNGTTALDWAQQQNQTEAAEIIKKHIEKSFSNSEEQQLLLDKYLS
TVHAELIDEVLIEQLIRKICMNSKDGAILVFLPGWDDINRTRERLHKSAFFKDASKFSII
PLHSMVPSVEQKKAFKRPPPDCRKIILSTNIAETAVTIDDVVFVIDSGRVKEKSYDPYNN
VSTLQSSWISKASAKQREGRAGRCQPGICYHLYSKLRSVSLPEFQVPEIKRMPIEELCLQ
IKLLDPDCNVEEFLQKTLDPPVYETIRNAIIVLQDIGALTIEEKLTELGQRIGSLPVHPL
TSKMLLIAILLNCLDPALTLACASEYKDPFTLPMLPTERKKADAAKAELATLYGGRSDQL
AVVAAFECWEGAKQKGEESKFCSLYYVSSGTMKMISRMRKQLQSELLRNGFIIQGYMSEY
NLNAQDPGILHAVLVAGLYPMVGRMLPPLRGGGGRKNVVETAGGDKVRLHPCSTNFKLSV
KNREQPIILYDEITRGDSGLHIRRCSIIGPLLLLLLATEIVVVPANDNNDVGDDNGSDYE
SGCEDDSEEEKKKSDLSNGENVMSSPDNRVKVVVDRWLPFFSTALDVAQIYCLRERLSAA
ILYRVTYPSKELPEALCASMYAFACILSFDWMNGISLPCEPIDSLTTMVRSAEISESPSG
KKNAEANKNYLKSLMCHDSLQNQNMPTSLGASSSQSSALQDLLSGPGSAMHRGSRRQRGN
GS
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggacacgaagactgcggcaggaggctctgggaaaggagggaagaagagcaagaaggcg
aataatggagcttggcccaagggcgttgatgaagccgctcgaattcggatttcagaaatt
ctccaacgctttcgatcttctaatgaagaagtgtacaaatttggatcaaatcttaacaat
tttgagcgagcagcagtgcatatgctgtgtaggaaaatgggcatgcgctccaaaagtcat
gggcatgggaatgcacgtcaggtatctgttttcaacaagggaaagaaaatagactcacag
agagggaatgagactctcacttgtcttaagttttcaaaaggtgcaaaaaccattctaaat
gatctatttagtcgatatccacctggtgacgaggagacaacttcttatatgtctgaaaaa
cataataaaaaagccggcaagttatttggattaaacgatgatatcttccgcaaacctgca
atggacaagtcagatattgcaaagaaagtggaactacttgcttctagagtggaaaaaagc
caagacctgagacagactttaaaacggaggtccaaacttccaattgcttctttcaaggat
atcattacatcaagcatagaatcttatcaggtagtgctaatctctggtgaaactggatgt
ggaaaaactactcaggtcccacaatatattttagatcacatgtgggctaagggtgagacg
tgcaaagttgtgtgtactcagccacggcgtatttctgcaacttctgtttctgaaagaatt
tctactgaaagaggtgaaaatcttggtgatactgttggttataagattcggatggaaagc
agcggaggaagacactcgtctattgtattttgtactaatggggttttactgaggattctg
gtcaacactagcaagttgaacaaaaaagctttgcaaagggggaaggatgctatgtctgac
attacccacatcattgtggatgaaattcatgaaagggatcgcttctccgatttcatgcta
gcaattatcagggacatgcttcctttgtatcctcatttgcgcctgattctaatgagtgcc
acaatggatgaggaacgtttttcaaagtattttggcggctgcccaataatcagagtccct
ggattcacttacccagtaaaaactttctacctagaagatgtacttggttttgttaaatca
gtggaaaataatcaccttgacaatacaacagctagtctcaactcaaaagactccgtatta
acagaggaatatagagttgccttagatgaagctattaatctggctgcaactgatgatgag
attgatcccctcttagatataatatcttctgaagcgatacctgcagtcattaattaccaa
cattctttgataggagtgacacctttgatggtttttgctggaaaaggtagtatcaatggt
ctttgcacactcctttctctgggtgctgactgccacttaaaaaccaagaatgggacaact
gctctagattgggcacaacaacagaaccagacagaagcagctgaaattattaaaaaacac
attgagaaatcattttccaattctgaggagcagcaacttttacttgataaatatctatca
acagttcatgctgaattgattgatgaagttctcattgaacagctaataagaaaaatatgt
atgaactcaaaggatggagccatcctagttttccttcctgggtgggatgatattaataga
acaagagaaagattgcataagagtgcatttttcaaagatgcatccaagttttcaataatt
cctctccattctatggttccatcagtggagcaaaagaaggcttttaaacgtcctccccca
gattgtcgcaaaatcattctttcaactaatattgctgagactgctgttaccattgatgat
gtagtttttgtaatagatagtggacgtgtaaaagaaaaaagttatgatccttataacaat
gtatcaactcttcaatcctcttggatttcaaaagctagtgccaagcaacgtgaaggacgc
gcagggcgctgccagccaggaatctgttatcatctttattcgaaacttagatcagtttca
ctgccagagttccaagttcctgaaattaagaggatgcctatcgaggagctatgtttgcag
attaagcttcttgacccagattgtaatgttgaggagttccttcagaagacattagatcct
cctgtttatgagacaataagaaatgcaattattgttctgcaagatattggtgccttgact
atcgaagagaaacttacagaacttgggcagaggataggatctttacctgttcatcctctt
acaagcaagatgcttttgattgctattttattgaattgccttgaccctgcattgacattg
gcctgtgcatctgagtataaagatccatttactcttccaatgttaccaactgaaaggaaa
aaagctgatgctgcaaaagcagagctagccacgttatacggtgggcgtagtgatcaattg
gctgtggtggctgcatttgagtgctgggaaggtgccaagcaaaaaggtgaggaatcgaag
ttctgttctctgtattatgtatcatctggtaccatgaaaatgatatcaagaatgcgcaag
cagctgcagtccgaattgcttcgaaatgggtttattatacaaggatacatgtctgagtat
aatctaaatgctcaagatccaggaattctacatgctgtccttgttgctggtttgtatcct
atggtagggagaatgcttccacctctcagaggtggaggtggaaggaaaaatgttgtagaa
actgcaggtggtgataaagttcgattgcatccttgctctaccaacttcaagctgtcagtc
aaaaaccgtgaacaacctataattctatacgatgagataactcgtggagatagtggtttg
cacataagacgttgtagtataattgggccactcctgctgctattgcttgcaactgagatt
gtagtggttcctgcgaatgataacaatgatgttggtgatgacaatggaagtgactatgaa
agtggctgcgaagatgacagtgaggaagagaaaaaaaaatcagacctgtccaatggagag
aacgttatgtcgtctcctgataatagagtgaaggtcgttgttgatcggtggctacctttt
ttttcaactgctcttgatgttgctcagatatactgcctgagagagagattatctgctgca
attttgtacagagtgacatatccatcaaaagaacttcctgaagctctatgtgcttctatg
tatgcatttgcttgtatcctatcatttgactggatgaatgggatctcattgccatgtgag
cccatcgactcacttactacaatggttcgttctgctgagatcagtgagtcaccttctggg
aagaaaaatgcggaggctaataagaattatcttaagtcacttatgtgccatgatagcttg
caaaaccaaaacatgcccacttcccttggcgcaagttcatctcagagttctgcattgcaa
gatctcctttctgggccaggatcagcaatgcacaggggttctaggaggcagcgtggaaat
ggatcctga
DBGET
integrated database retrieval system
