Ipomoea nil (Japanese morning glory): 109187752
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Entry
109187752 CDS
T04663
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109187752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109187752
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109187752
Spliceosome [BR:
ini03041
]
Complex C
Other components
Step II factors
109187752
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
KH_DEAH11
Helicase_C
IBR
DEAD
AAA_22
OB_NTP_bind
IBR_1
Rcat_RNF216
AAA_19
HA2_C
WHD_HA2
ResIII
nSTAND_NTPase5
AAA_29
ABC_tran
KH_1
NAT10_TcmA_helicase
SLFN-g3_helicase
AAA_30
nSTAND3
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
109187752
NCBI-ProteinID:
XP_019193603
LinkDB
All DBs
Position
Un
AA seq
1743 aa
AA seq
DB search
MHRPGVLDTARRNRPPEKLYYTESGHCYRPRQPYQHQWNSQFSNRRDRFPGPPKTQQKFV
IQFRSSSRTLKRSELDELIEKLPSPPQSSYVFDSGSVLGTLFYEQWSEAVEVVVKLWRIR
LDGGLPVAPSLVENAEVSSKKEELKDRLRGVFLEKLEGLMEGELVQKCRQKLELLEAEIK
KVSKLLGRPKRIALANELLNKKEAFVAEKDLIAKRIAELKNGVSCIVLQLEGKYSGEDVH
GDSTALFNFETEFNWDRILHLIKRECRRLEDGLPIFAFREEILKQIDSQQVTVLIGETGS
GKSTQLVQFLADSGIAGNGAVVCTQPRKLAAISLADRVKEESVGCYKEKSIACYPSYSSI
HQFESKVTFMTDHCLLQHYLRDKSLCKISCIIIDEAHERSLNTDLLLALLRNLLHERHDL
RLIIMSATADADQLTDYFFGCRTFYVSGRTFPVDIKYVPSECEGSFVSGSGMVPSYVSDV
VSTVTDIHKAEGEGTILAFLTSQMEVEWAIETFQAPSAIALPLHGKLSYEDQHRVFLNFP
GKRKVIFTTNVAETSLTIPGVKYVVDSGRVKESRFEPGTGMNVLKVCPVSKSSANQRAGR
AGRTEPGRCYRLYSKNDFENMPCHKEPEIRRVHLGIAVLRILALGIKDVQSFDFVDAPSP
KAIEMAIRNLIYLGAIACIDDGYELTADGHYLVKLGIEPRLGKIILSCFHHHLGKEGLVL
AAVMANSNSIFCRVGTEVDKLKSDCLKVQFSHPDGDLFTLLSVYKEWDAVPQEKKNAWCW
NNSINAKTMRRCQETVEELEACLQNELSIVVPTYWHWDPHMHTEHDETLKHIILSSLSEN
VAMFSGYDQLGYEVALTGKHVKLHPSCSLLNFCQRPTWVVFGDILASVKEYLVCVTAFDF
NNLATSFPPSLFDFSKMDAQKLQKKTLTGFGSMLLKRLCGKSNCHINRFVSRMRTLCMDE
RIGIEVNVDQNEIAMYASSRDMERVFENLNEAVEYEYKLLKNECLEKCLYNRGSAYSVPT
ALFGAGAEIKHLELEKRCLTVDVFLSKGNSFDDKELLMFLERNAGDICVVHRSSGVGQDS
GEMERWGRVTFVTPNAAKRASALNSGPLSGGMVKVVPSKTMYDGDQNMISSHLLKAKVRW
PRRSSTGVAIVTCHPKDIAIMVDDFSSVLIGGNRVQCEPSIKYPDNIVITELDSELSEAE
ICEVLTPVTDRKILDLFLLRGNSVEGPPLVACEEALLREISFFMPKRNPYGNSTRVQVFH
PGPTDYYMKAAITFDGSLYLEAARALEEMNGKVLPGCLSWQKIECQQLFSSSVSCLAAVY
HVIKNQLDTLLASFRHRKGVECNLRRNENGSYRVTISAGATKLVAEVRKPFEQLMKGKII
DHGGITPTVLQHLFSREGIFLMKSIQQETGTYILFDRHTHTLRIFGSSNKIDMAEKKFVD
LLLSLHESKQLEVHLRGEALPPNLMKRVVQRFGADLNGIKQMFPEGNFSLNVKQHCISIS
GPKEVKQKVEDVIYEMAQASSLQKQRSDDETDCPICLCEVEESFKLENCFHDFCRSCLVE
QCESAIRSREGFPMCCMHKGCKAPILIADLKSLLSIEKLEELFRASLGAFVAASGGSYRF
CPSPDCPSVYRAADPGTTGEPFICGACYAETCTSCHLEYHPFISCVKYREIKDDPDYNSL
KAWKKGKENVKNCPDCSLTIEKVDGCNHIECKCGKHVCWVCLEFFATSDDCYDHLRSVHA
TIT
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgcatagaccaggggttttagacaccgcccggcgaaatcggccaccggaaaagctttat
tatacggaatcgggccactgttaccgcccgcggcagccgtatcagcatcagtggaattct
cagttcagcaaccgtcgtgatcgttttcctggaccgccgaagacgcagcagaaattcgtt
atacagttccgttcgagtagccggacgctgaagagatcagaattggacgagctcatcgag
aaattgccgtcaccaccgcaaagttcctatgttttcgacagcggttctgttttagggact
ctgttttacgagcagtggagtgaggctgtggaggtggtggtaaagttatggagaatccgt
ctcgacggggggcttccggtggcaccatcgctggtagagaacgcggaggtgtcgtcaaag
aaggaagaattgaaagatcggctccgaggtgtgtttctggagaagctcgaggggctaatg
gaaggggaattagtgcaaaaatgtaggcagaagttggaattgctggaggcggagattaaa
aaggtctccaaattgcttggaaggccgaaacgtatcgctcttgcaaatgaactattgaat
aagaaagaggcttttgtggctgaaaaggacttgatagcaaagaggatagcggagctcaag
aatggggtgagttgtattgtgcttcaattggaggggaagtactccggggaggatgttcat
ggagacagtacggcgttgtttaactttgaaacagagttcaattgggaccgcattcttcat
ctgattaagagggaatgccgaagacttgaggatggcttacccatttttgctttcagggaa
gagattcttaagcaaatagattctcaacaggttacagttttgattggggagactggctca
ggcaagagtacacaattggttcaattccttgcggattcaggaattgctggaaatggtgct
gtagtctgcactcaaccccggaaacttgctgccatctctttggcagatagggttaaagag
gaaagtgttggctgctacaaagaaaaatctattgcctgttatccatcatattcatccatt
catcagtttgaatcaaaggtaacatttatgacagatcactgcctactgcagcattatttg
agagataaaagtttgtgtaagatttcatgcattataattgatgaagcacatgaaagaagc
ctaaacacagatcttcttttagcattgctaaggaacttgcttcatgaaaggcatgattta
aggcttatcattatgtctgccacagctgatgcagatcagcttacagattacttctttggt
tgtagaacattttatgtgtctggcagaacttttccggtggacattaagtatgtacccagt
gaatgtgaaggtagttttgtttctggttctggtatggttccttcttatgtttctgatgtt
gtaagcactgtgactgatatccacaaagcagagggagagggaacaattcttgccttcctg
acttctcagatggaagtagagtgggctattgagacttttcaagccccctctgccattgca
ttacctttacatgggaaactctcctatgaagaccaacatcgggttttcctgaatttccct
ggaaagagaaaggtaatattcactacgaatgttgctgagacatctttgacaattccaggg
gtcaaatatgttgttgattctgggagggtgaaagaaagcagatttgaacctggaactggc
atgaatgttctcaaggtttgcccagtcagcaaaagctcagcaaatcaacgagctgggcga
gctggcagaactgaacctggaaggtgctatagactgtactctaaaaatgattttgagaat
atgccttgtcataaggaacctgaaattcgtagggttcatcttggtattgctgtgctaagg
attcttgccctgggcatcaaggacgtgcaaagttttgattttgttgatgcacctagtcct
aaagcaattgagatggctatcagaaatctgatttacttaggagctattgcatgcattgat
gatggttatgaattaactgcagatggacattatctagtgaagttgggtatcgagccccgg
ttgggtaagataatccttagttgtttccatcaccatttgggtaaagagggtcttgttctt
gctgctgttatggcaaattcaaacagcattttctgcagagttggtactgaagtagataaa
ctaaaatctgattgccttaaggttcagttttcccatcccgatggtgatctcttcacttta
ctatctgtttacaaggaatgggatgctgtgcctcaagaaaagaaaaatgcctggtgctgg
aataatagcatcaatgccaaaaccatgagaaggtgccaggagactgttgaagaactggaa
gcctgtcttcaaaatgaactgagtattgttgttccaacttactggcattgggatccacat
atgcacactgagcatgatgaaactttgaaacacattattctctcttccctttcagaaaat
gtggcaatgttctctggttatgatcaacttggctatgaggtagcattgacaggtaagcat
gtcaaattgcacccttcatgttcgttgttgaatttttgtcaacgacccacttgggtagtt
tttggtgatatcctggcatcagttaaagagtatctggtctgtgttactgcatttgacttt
aacaacctggctacttcgtttcctccttcgttgtttgatttctcaaagatggatgctcaa
aagctacaaaagaagactttgacagggtttggaagcatgctgctgaagagattgtgtgga
aaatctaactgtcacatcaatcgttttgtttcgcgaatgagaacattgtgcatggatgaa
cgcattggcattgaagtgaatgttgatcagaatgagattgcaatgtatgcttcttccaga
gacatggagagggtttttgagaatctgaatgaagcagtggagtatgaatacaagttgttg
aaaaatgaatgtctggagaaatgtttgtacaatagaggatctgcttattcagtgcctact
gccctttttggagctggtgctgagataaaacatttggagcttgagaagagatgtttgaca
gttgatgtatttctttcaaagggaaattcatttgatgacaaagaattgttgatgtttctg
gaaaggaatgcgggtgacatttgtgtggtccacaggtcctcaggtgtgggacaagatagt
ggggagatggagagatggggcagggtaacatttgttacccccaacgctgctaagcgtgct
tctgcactaaactctggcccacttagtggtggcatggtcaaagtagttccttccaagacc
atgtatgatggtgatcaaaatatgatctcatctcatttgctcaaagcaaaagtgcgttgg
cctcgcagatccagtacaggggtagctattgtgacatgtcacccaaaggatattgctatt
atggttgatgacttctctagtgttctaataggaggaaacagagttcaatgtgaaccaagc
atcaaatatcctgacaacatagtgattacggaacttgatagtgagctttctgaagctgag
atttgtgaggtgttaactccagtgacagacagaaaaattttggatttgttcctactaaga
ggaaatagtgtagaaggtcctccattagttgcttgtgaagaagcacttctaagagaaata
tctttcttcatgcctaaaaggaacccctatggtaactctactcgtgtccaggtcttccat
cctggaccaacggattattacatgaaagcagctataacattcgatggaagtctatatcta
gaagctgcaagagcactggaagaaatgaatgggaaagtattgcctggatgtctttcatgg
cagaagatagaatgccagcaattgttttctagttctgtgtcctgtcttgcagcagtatat
catgttattaagaatcagctggatactttacttgcaagcttccgtcatagaaagggtgtt
gagtgcaatcttcgtaggaatgagaatggttcctatagagttaccatatctgctggtgcc
acgaaacttgtggcagaagtgagaaaaccatttgagcagcttatgaaagggaaaataata
gatcatggtggcattactccaacagttctgcagcatttattttctcgggaagggatcttt
cttatgaagtcaattcagcaggagacaggaacctatattctttttgacaggcatacccat
acgttgagaatctttggttcttcaaacaagattgatatggcagagaagaaatttgtggat
ttgcttctgtcacttcatgaaagcaagcaacttgaagtccatcttcgtggagaagctttg
cccccaaatctgatgaagagagtggttcagaggtttggagcagaccttaatgggatcaag
caaatgtttcctgagggtaacttctctctaaatgtcaaacagcattgtatctctatcagt
ggtcccaaagaagtgaagcaaaaagttgaagacgtaatttatgagatggcccaagcaagt
agtctgcagaaacaaaggagtgatgatgaaactgactgcccaatttgcttgtgtgaggtg
gaggagagtttcaagttagaaaactgtttccatgacttctgccgatcatgcttggtggag
cagtgtgagtctgccatcagaagcagagaaggtttccccatgtgctgtatgcataaaggt
tgtaaggctccaatcctgattgctgacttgaagtctctgttatcaattgaaaaactggag
gagcttttcagggcatcattaggggctttcgtggcagcaagcggaggttcttacaggttt
tgcccatcgcctgactgcccttcagtttatcgtgctgctgatccaggcactaccggggaa
ccattcatctgtggtgcatgttatgcagaaacatgtacgagctgccaccttgagtatcat
ccattcatttcttgtgtcaagtaccgtgagattaaagacgacccagactacaactctctg
aaagcatggaaaaagggaaaagagaacgtgaagaattgccccgactgctcgttgacaatc
gagaaggtggacggctgcaatcacattgagtgcaagtgtgggaaacatgtttgctgggtt
tgtttggagttctttgctacaagtgatgattgctatgaccatttgaggtctgtacatgcc
accattacatga
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integrated database retrieval system
