Ipomoea nil (Japanese morning glory): 109188173
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Entry
109188173 CDS
T04663
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109188173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109188173
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109188173
mRNA degradation factors
5'-3' decay
Decapping complex
109188173
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML_2
RE_TdeIII
CSTF_C
Motif
Other DBs
NCBI-GeneID:
109188173
NCBI-ProteinID:
XP_019194276
LinkDB
All DBs
Position
Un
AA seq
1399 aa
AA seq
DB search
MASPGNLNQPGGGPFDVPKFFKTSAPSPPPPVAAAVAAANPTPQNPNFISSSPFPPPSVA
SYPPTSGMEYIYSFPPQTSAPFPHHPQFHHQHLPPYTAPLLPQAQGLQRSMSFPTPPLQP
PPATPHQFQNPNATPNPGARLMALLGAPPSTLETPQQIMPVPPIHSAASGSDPSEFPLPH
GAPGSLSGPLPVRMPSSKLCIGRHLSGDHISYDIDARLPGEVQPQLEVTPITKYTSDPGL
VLGRQIAVNKTYICYGLKLGAVRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASV
DGRVYIWKITEGPDEEDKQQITGRMVTAIQVVGEGESFHPRVCWHCHKQEILVVGVGKRI
LRIDTTKVGKGEVFSAEEPLRCPFDRLVEGVQLVGTHDGEITDLSMCQWMTTRLVSASVD
GMIKIWDDRKPMPLAVLRPYDGQPVHSVTFLVAPERPDHIILITGGPLNRELKVWVSTSE
EGWLLPSDAESWHCTQTLELKNSGEARVEEAFFNQVMALSQAGLFLLANAKKNAIYAVHL
EYGPNPASTRMNYIAEFTVTMPILSFIGTSDLLPHGEQVIQVYCVQTQAIQQYALDLSQC
LPPPLETAMLEKSESSASREVISIEGFAQNEHSGSKPTELPISSSAPKIPVHDGGSESVP
TVRNPVGSASIEIATPQEFSSSMENKPATSSIVNANADILPIASPPLPLSPRLSQKLSSF
RSPSNSSEPGPSLNHRGGDPIVEYSVDRQMDAIHANLSDAASLDDDENKVSHEEVSSGLN
NPIKFKHPTHLVTPSEILMATNQQKNDGEKNIQDVVINNEARNMEVEVKVVGESISSQNN
DTREELHVNVSNKKEKSFCSQASDLGMEMARECHDVSPETYIVEDSKQIHSANGGEELAQ
PSNDQEEDCNSTKDVPRKELNSTNPVPVQQPPAPTTKGKKQKGKSSQGSGPSSLSPGVVN
PTDSHNEADVISSIPSMEAASTQISSMHEMLNQLISMQKETQKQMGMLVAVPVTKEGKRL
ETVLGRQMEKVAKANADALWARLQEESVRQEKLLRERTQQITNLISNSLNKDLPVLVEKL
VKKELGAIGQTVARSIEKTVSVSISETLQKGVGDKAVSQLEKSVNSKLEVTVARQIQAQF
QTSGKQALQENLKSILEASLVPAFEMSCKAMFEQVDATFQKGMAEHSAAAQQQFESMHSP
LALALRDAINSASSVTQTLSGELADGQRKLLALANSKAANPTVNPLNNGPLLQEKFEAPV
DPTKELSRLLVERKYEEAFTAALQISDVNIVSWLCSQVDMPGILSMNPLPLSQGVFLSLL
QQLACDISKETTRKLSWMRDVVSALNPNDPMIAMHVRPIFEQVYQILNHHRNLPTTSGAD
QSSIRLIMHVINSMLMSPK
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggaaatcttaatcaaccaggtggaggaccattcgacgtgcccaaattc
ttcaagacatcggcgccgtcaccaccgccgcctgtggcggcggcggtagcagccgcaaac
cctactccccaaaaccctaacttcatttcctcctcgccttttcctccgccgtctgttgct
tcctatcctcccacctccgggatggaatatatttactcttttccgcctcagacctccgct
ccattcccccaccacccccaattccaccaccagcacctccctccctacaccgccccgctt
cttcctcaagcccaagggcttcagagatccatgtctttccccaccccacctcttcaacct
ccgccggcgactcctcaccagttccagaaccctaatgctacccccaatccaggggctcgc
ctcatggctctgttaggtgcgccgccttccactctcgaaactccgcaacagataatgcca
gtgccgcccattcactctgccgcttccgggtcggacccttccgaatttccattgccccac
ggtgctcccgggtctctatcgggtcctctgccagtgcggatgcccagcagtaagctgtgt
atagggcggcatttgagtggcgaccacattagttatgacattgatgctagattgcctggt
gaggtgcagcctcaactcgaggttactcccattacaaagtatacttcagatcctggactt
gttttgggccggcaaattgcagtcaataagacttacatatgttacggattgaagttgggt
gctgttcgggtccttaacatcaatactgctctcagatcattgctaaagggcctagcgcag
agggtcacggacatggctttctttgcagaggatgttcatcttttggctagtgcaagtgtt
gacgggcgggtttatatatggaaaatcactgagggaccggatgaggaagacaagcagcaa
ataactggcaggatggttactgctattcaagttgtgggagaaggagaatcttttcatcca
cgagtttgttggcattgtcataaacaagaaattcttgtggttggggttggaaagagaatt
ttgagaattgatacaaccaaagttggaaaaggcgaagtattttcggctgaagaaccactg
agatgcccatttgatcggttggttgaaggggttcagcttgttggtactcatgatggagaa
attactgacttatcaatgtgccagtggatgaccactcgtctcgtgtctgcttcagtggat
ggcatgatcaagatttgggatgaccgcaagcccatgccacttgcagtactaaggccatat
gatggtcaaccagttcattcggttacatttttggttgctccagagcgcccagaccacatc
atacttattactgggggcccactgaacagagaactgaaggtatgggtatctacaagtgaa
gaaggatggttgcttcccagtgatgctgaatcatggcactgtacacagacattggagttg
aagaattcaggtgaagctcgagtcgaagaagcattttttaatcaagtcatggctttgtct
caagcaggtctatttttattggcaaatgcaaaaaagaatgccatatatgcagtgcaccta
gaatatggccctaatccagcatcaacacggatgaattacatagcagaattcacagttact
atgccaatattgagttttattgggacaagtgatttactaccgcacggggaacaggttatt
caggtgtattgtgtgcaaacacaggctattcagcagtatgctttggacctatcccagtgt
ttgccacctccactggagactgccatgttagagaagtcagaatctagtgcctcacgcgag
gttattagtattgaaggatttgctcaaaatgagcactctggaagtaaaccaacggaatta
cctatatctagttctgcacccaaaattcctgtgcatgatggtggttctgagagtgtgcct
acagtgaggaatcctgttggttctgcttctattgagatagctacgccacaggagttcagt
tctagcatggaaaacaaaccggctactagctccattgtaaatgccaatgctgatattctt
cccattgcatcacctcctcttcctttgagtcctagattgtctcagaagctttctagtttt
agaagcccatcaaacagctctgaacctggtccttctcttaatcatcgtggtggagatcca
attgttgaatattcagttgacagacaaatggatgccattcatgcaaatttgtctgatgca
gcttctctggatgatgatgaaaacaaggtttctcatgaggaggtttcctcaggtctcaat
aatcctatcaaattcaaacatcccactcatctggttactccttcagagattttgatggct
acaaatcagcagaagaatgatggagaaaagaacatacaagatgttgtaatcaacaatgaa
gcacgcaacatggaggttgaagttaaggttgtgggtgaatcaatatctagtcagaataat
gacactcgagaagaacttcacgttaatgtctcaaataagaaggagaaatccttttgctct
caagcctctgatcttggaatggagatggctcgagagtgccatgatgtttcacctgaaacc
tatattgttgaagattctaagcaaattcatagtgctaatggaggtgaagaactggcccaa
ccatcaaatgatcaagaggaagattgcaattctaccaaagatgtccccagaaaggagtta
aactcaactaacccagttcctgttcaacagccacccgcacctactacgaaggggaaaaag
cagaaggggaaaagttctcaaggatctggtccatcatcattatcacctggtgttgtcaat
ccaactgattctcacaatgaagcagatgtcatctcaagtatcccctcgatggaagctgca
tctacacaaatttcatccatgcatgagatgctgaatcagctcatctccatgcaaaaagaa
acacaaaagcagatggggatgttggttgctgttccagttaccaaagagggaaaaaggctt
gagacagtcttgggacgccagatggagaaagttgctaaggccaatgctgatgctttatgg
gctcgccttcaagaagaaagtgttaggcaggaaaaattattgcgtgagcgtactcaacag
ataacaaatttgatctcaaacagcctaaacaaggaccttccagtgttggtggaaaaactt
gtgaagaaagagttaggtgccattgggcaaactgttgcacggagtattgagaaaacagta
tcagtgtctatttcagaaactttgcagaaaggagttggtgacaaggctgtgagccagcta
gagaaatcagtcaattccaaacttgaagttactgttgcaagacaaatccaagcacagttt
cagacttctggaaaacaagctctccaggagaatctgaaatctattcttgaagcctcgctt
gtccctgcttttgaaatgtcatgcaaggcaatgtttgagcaagtggatgctacatttcaa
aagggaatggctgaacattccgctgctgctcagcaacagtttgagtcaatgcattcacca
ctggctcttgctttaagggatgccatcaattcggcatcatcagtgacacaaaccctaagt
ggtgagctggctgatggtcaaagaaagttgcttgctctagcaaattctaaagccgcaaat
ccaactgtcaacccattgaataatgggcccttgctccaagagaagtttgaagcacccgtg
gatccaaccaaagagttatctagattgttggtggagaggaaatatgaggaggccttcact
gcagccttgcagatcagtgatgtgaacattgtatcctggctatgctctcaggttgatatg
cctgggatcttatcaatgaaccctctcccattgagtcaaggagtattcctctcactactt
caacagttagcttgcgacattagcaaagagacaacccggaaactgtcatggatgagagac
gtggtatccgccctaaacccaaacgatccgatgattgcaatgcacgtccgtcctatcttc
gagcaagtgtatcagatactaaaccatcatcggaatcttcccaccacgagcggtgccgac
cagtccagcatccgcctgatcatgcatgttatcaactcaatgttaatgagccctaaatga
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