Ipomoea nil (Japanese morning glory): 109188444
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Entry
109188444 CDS
T04663
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109188444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109188444
Enzymes [BR:
ini01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109188444
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109188444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109188444
NCBI-ProteinID:
XP_019194677
LinkDB
All DBs
Position
Un
AA seq
681 aa
AA seq
DB search
MKKQWMIRALSKTLISAPHAGLTSFSRALCSSAFALKNVTRSNFESALEDLRGLIKAADF
VAIDLEMTGVTSAPWRDSFELDRYDIRYLKVKDSAEKFAVVQFGVCPFRWDSVKHFFIAH
PHNFYIFPRQEIPGNDQSYEFLCQTTSLDFLVKYQFDFNTCISEGVSYLSRNQETIALER
LNSIYMDESSDSLSSVKEVGDLQYARMADVLFAERMKIKIREWRDGLLQDRNNSSEFQQT
PNNSDQRFQTIFFKMRPAVVLSGFTSHQKKLIQLVTEKHFKDLAFVRVTDDETLCPQQLV
VYTDSKDDRDLLMKEVKDCILNEGQRKVKAAVGFRNVIDLLSSEKKLVVGHNCFLDFAHI
YNKFIGPLPWTAEEYATSLHNYFPHIIDTKVLLNANDSFQSLKKKSSTSLSKAFASLCPE
IASGVKGYSLADKSCVKVEVQVDEKRSLNWNSGAKHEAGYDAFMTGCVFAQACSHLGVDF
KTHSPPLGLADEKKLQNYINLLYLSWVSGDIVDLRTGKRNADCLSSSNLKSQSGEIPFQN
IVLLWGLPSNLKPSDIRDCISRVFGQNSAPSIYFIDKTAAFVQFSKTEMATSFLDTMETL
GRSNDPISVLHPLSRLLEGGCTHAANYEVYRQICSSPLSKVLFADQAEAIRTKGVCEVSK
ANKVEEMIEDEKHTTFAQSCI
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacagtggatgattagggctttatctaagaccctaatctcagctcctcacgcc
ggcctcacctccttctcccgcgctctttgttcttcggccttcgctctcaagaatgttaca
aggtccaacttcgaatcggcgctcgaagatttgcgtggcctcatcaaggccgccgacttc
gttgccatcgacttggaaatgaccggagttaccagcgccccctggagagactccttcgag
cttgaccgctacgacattcgctacctcaaagtcaaggactccgccgagaagttcgccgtc
gttcagttcggcgtttgccccttccgatgggactctgtcaaacacttcttcattgctcat
ccacacaacttttacatatttcctcggcaagaaattccaggaaatgaccaatcttatgag
ttcttatgccagacaacgtcactcgatttcttggtcaagtaccagtttgatttcaataca
tgcataagtgaaggggtctcgtatttatccagaaaccaagaaacaatagcattggaacgc
ttaaattctatctacatggatgaatcttctgattcattgtccagcgtaaaggaagttgga
gacttgcaatatgctaggatggcagatgttctatttgctgagcgaatgaaaatcaagatc
cgtgaatggcgtgatgggctgttacaggataggaataatagttccgaattccaacagact
ccaaataattcagaccagagatttcagacaattttcttcaaaatgcgcccagccgttgtg
cttagtggatttacttctcaccagaaaaagttgatccaattggtcacagaaaagcatttc
aaagatcttgcatttgttcgtgtcactgatgatgaaactctgtgtccacagcaattggtt
gtttatacagattccaaagatgacagggatttgcttatgaaggaagtaaaggactgcatt
cttaacgaaggacaaaggaaagtaaaagctgctgtcgggtttcgaaatgttattgatctc
ctttcctctgagaagaaactggttgttggtcacaactgctttcttgactttgctcatata
tataacaaattcattggcccactcccttggactgctgaagaatatgccacgtctctccac
aactactttccacacataattgacacaaaagtactcttgaatgcaaatgattcttttcag
tctttgaagaagaaaagcagcacgtcactatctaaagcatttgcttctctctgtcctgaa
attgcgtcgggtgttaaaggctatagtttggctgataaatcttgcgttaaagtggaggtt
caagtggatgagaagaggtccttgaactggaactctggagcaaaacatgaggccggctat
gatgcatttatgacaggatgcgtatttgctcaagcatgcagtcatctcggagttgatttc
aagacacattcacccccacttggtctagctgacgaaaagaaacttcaaaactacatcaat
cttctctatcttagttgggttagtggagacatcgttgatctgagaactggaaagcggaat
gcagactgtttgtcttctagcaatctcaaaagtcagtccggggaaattccgtttcaaaac
attgttctcttgtggggcttaccatctaatctaaaaccatctgacattagagattgcata
tcaagagtttttggtcaaaactcagctccttccatctacttcatagataaaactgctgcc
tttgttcagttcagcaaaacagaaatggcaacctcgttcctcgacacaatggaaacttta
gggaggagcaatgatccaatatcagttttgcatcctctctcaagacttctggagggtggt
tgcacacatgctgcaaactatgaagtatacagacaaatttgcagttcacccctttcgaaa
gtcttatttgcagatcaggccgaagccatccgaaccaaaggagtatgtgaagtttcaaag
gctaataaagtagaggaaatgatagaagatgaaaaacacacaacttttgcccagagctgt
atataa
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