Ipomoea nil (Japanese morning glory): 109190810
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Entry
109190810 CDS
T04663
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03022
Basal transcription factors
ini03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109190810
09124 Replication and repair
03420 Nucleotide excision repair
109190810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109190810
03400 DNA repair and recombination proteins [BR:
ini03400
]
109190810
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109190810
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109190810
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
FUSC-like
GRAM
Motif
Other DBs
NCBI-GeneID:
109190810
NCBI-ProteinID:
XP_019196979
LinkDB
All DBs
Position
Un
AA seq
603 aa
AA seq
DB search
MADKQVIKRAKYKSSVKDTGVPGVLKMTMEKFMFKANDPKSSSSKLNVEFRLIKGHRFTK
EGTSKQALLNLSQDQGKNYIFEFDSFSDRDACRDFVASVITSSGDSGKTAPAPAPTPESS
AVPRDEQLSTAEMERRIKLLQENSELQKLHKQFVIGGILSEGEFWAARKKLLDQGDAKRP
KQQVALKNHIWHKKPNIDGQPNRITFNLTPEIILQIFAEKPTVRQAYLKFVPKKMTEKEF
WTKYSRAEYLQGMKNAFAAAAAEAAEDEELAVFLKQDEILANEARKKIKRVDPTLDMEAD
EGDDYIHLPDHGLPRTDTKETEDLQFEPYKRSFGQELNQHAAVVLRGRVVDELGDPKSVA
EALGTRKEVGEESEENFGRERSIRASRMAEIEDLQAPPEPPVAPLSIKDPRDYFDSQQAN
ALKALGDSVAGNRQYKYSVSTEEAFSSLKEFITEINSQGLLEPIVSPEAAFKVFNALTQN
ISSTKYNLGKNPHESVLDRLPSAIKDELLHHWTAIQELLKHFWSSYPITTKYFYTKVTKL
KDAMSQIYQKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADLQKRSAKSGARLN
GLL
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcggataagcaggtgattaagcgagctaagtacaagtcatcagtcaaggacactggc
gtccctggcgttttgaaaatgaccatggaaaagttcatgtttaaggccaatgacccgaag
tcatcatcatccaagcttaacgtggagtttagactgattaaaggccatagattcactaaa
gagggtaccagtaagcaggccttgcttaatctttcccaggatcagggtaaaaactatatt
tttgagttcgacagtttctcagaccgtgatgcttgcagagactttgtggcatcagtcatc
acgtctagtggagattctgggaaaactgcccctgcccctgcccctacacctgaaagttct
gctgttccaagagatgagcaacttagtacagctgaaatggagcgccgaattaaactactt
caggaaaatagtgaattacagaaacttcacaagcaatttgttataggcggcattttgtca
gagggcgaattttgggcagcaagaaagaagctactagatcagggtgatgctaagaggcca
aagcaacaggtagctttgaaaaatcacatttggcataaaaaaccaaatattgatggtcag
ccaaacaggattacctttaacttgacacctgagatcattcttcagatttttgcagagaaa
ccaactgttcgtcaggcatatcttaagtttgttccaaagaagatgacagaaaaggagttc
tggacaaaatattcaagagctgaatatctccaaggcatgaaaaatgcttttgctgctgct
gcagccgaggcagctgaagatgaggaacttgctgtttttctgaaacaagatgaaatcttg
gcaaatgaagctaggaaaaagattaaacgagtggatccaacattggacatggaagcagat
gaaggcgatgattacattcatctgccagatcatgggctacctcgtactgatactaaagag
actgaagatttgcaatttgagccatacaaaagatcttttggacaagagctcaatcagcac
gctgcagtggttcttcgaggcagagttgtagatgagttaggggacccaaaatctgtagcc
gaagcacttggcactcgaaaagaggttggtgaagaatctgaggagaactttggcagagag
cgctcaatacgggcatctcgaatggctgagattgaggatcttcaggcacctccagaaccc
ccagttgccccactgtctatcaaggatcctcgagattactttgattcccaacaagctaat
gcactcaaggcccttggggattcggtagctggtaacagacaatataaatatagtgtgagc
actgaagaagcttttagctccttgaaggaatttatcacagaaatcaattcacaaggatta
ctagagccaatagtcagtccagaagcagcttttaaggtgttcaatgcactgactcagaac
atatcaagtaccaaatataatcttggaaaaaaccctcatgaaagcgttttggataggttg
ccaagtgcaatcaaggatgaactactacatcactggacagctatccaggaattattgaag
catttctggtcctcttatccaatcacaaccaaatacttttataccaaggtgacaaaattg
aaagatgcaatgtcccaaatatatcaaaagctacaggagatcaaggaatctgtgcagtca
gatttcagacatcaagtttcccttcttgtacagccaatgcttcaggccttagatgctgct
tttgcgcattatgatgcagatttacagaagagatctgcaaaaagtggagcaaggttgaac
ggacttttgtag
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