Ipomoea nil (Japanese morning glory): 109191360
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Entry
109191360 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109191360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109191360
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109191360
Spliceosome [BR:
ini03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109191360
Complex B
109191360
Complex C
U2 SnRNP specific factors
109191360
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109191360
NCBI-ProteinID:
XP_019197538
LinkDB
All DBs
Position
Un
AA seq
769 aa
AA seq
DB search
MSKRKFGFDGFGINRQATYNFERAEAPQRLYVPPSSRSVGGHDNYEDTDLDNIDYDERDG
NEDNNNDINDGSGGADDEIDPLDAFMEGIHEEMKAAPPPKPKEKLDKYKDDIEDDPMESF
LKAKKDIGLQLAAEALNAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIILDKKKIEPIPAL
DHSSIDYEPFNKDFYEENPSISGMSEQDVIEYRNSLAIRVSGFDVPRPVKTFEDCGFSVE
LLKAISKQAYEKPTPIQCQALPIALSGGDIIGIAKTGSGKTAAFVLPLMVHIMDQPELEK
EEGPIGVICAPTRELAHQIYVETKKFAKSHGIRVSAVYGGMSKLEQFKELKAGCEIVVAT
PGRLIDMLRMKAVTMTRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR
KVEKLAREILSDPVRVTVGEIGMANEDITQVVQVIPSDAEKLPWLLEKLPGLIDDGDVLV
FASKKATVDEIESQLAQMGFKVAALHGDKDQASRMETLQKFKSGIYHVLIATDVAARGLD
IKSIKSVVNFDVAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLITAGQ
NVPAELMDLAMKDGRFRSKRDARKGGGKRAKGRGGSGRGVRGVDYGLGIGYSAESSNAPT
TTVPSRSAAVNSLRTGMMAQFKSNFVAASSNLQNQALGNSSGMNPNKKMALPGFVSGGTI
GGDTNASRTSSISNAATSVQKPREDASHLSSGSSRDRQRERRRPSGWDR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaagttcggattcgatggctttggtattaatcgacaggcaacatacaac
ttcgagcgagcggaagctcctcagcgtctctacgtaccgccctcgtcccgctccgtcggt
ggtcacgacaattacgaagatactgacttggataatattgattacgatgaacgagatggc
aacgaagacaacaataatgatattaacgatggcagtggtggtgccgacgatgaaatcgac
cctctggatgcgtttatggaggggattcacgaagagatgaaggcagcgccgcctccgaag
cccaaggagaagttggacaagtacaaggatgatattgaggatgatcccatggagagtttt
ctgaaagcgaagaaggacatagggttgcaattggctgcggaggctcttaacgctggatat
aactcggatgaggaggtttatgccgcagccaaggctgtggacgcagggctcgtcgagtat
gattccgatgataatcctataattcttgacaagaaaaagattgagccgattccagctctg
gatcatagctcaattgattatgagccattcaacaaggacttctacgaggaaaatccctct
atttcaggcatgagtgaacaggatgttattgagtataggaatagcttggctattcgtgtc
tcaggctttgatgtcccaagaccagtgaagacatttgaagattgtgggttttctgttgag
ctattgaaagcaatttcaaaacaagcatatgaaaaacctacaccaatacagtgccaggct
ttaccaattgccctttctgggggggatatcattggtattgctaagactggttctggtaag
actgctgcatttgtgctgccattgatggtgcatattatggatcaacctgaacttgagaaa
gaagaaggtcctattggagtaatatgtgcacccactagggaactggcacaccaaatatat
gtggagactaagaaatttgcaaagtctcatggtatacgtgtctctgctgtttatggtgga
atgtctaaattagaacaatttaaggaattgaaggcaggatgtgagattgttgttgctact
cctgggagattgattgacatgcttagaatgaaggctgtgacaatgacgagggcaacttac
ctagtgcttgacgaggctgatcggatgtttgaccttggttttgaaccacagataaggtca
atagttggtcaaattaggccagatcgtcaaacattactcttttcagcaaccatgccacgt
aaagttgaaaagctagcaagggagattctttctgatcctgtacgtgtcacagtaggtgag
attggaatggcaaatgaggatattacccaagtggttcaagtaattccttctgatgctgag
aagttgccttggcttcttgagaagcttcctggtctgattgatgatggtgacgttcttgta
tttgcttccaaaaaggccacagtggatgagatcgaatcgcaactagctcaaatgggtttt
aaagttgcagctcttcacggtgacaaggatcaagcttctcgtatggagacactgcagaaa
tttaaatccggaatttatcatgtgcttattgctactgatgttgctgctcgtggtcttgac
atcaagtcaattaagtcagtggttaattttgatgttgctaaagacatggatatgcatgtt
catagaattggtagaacaggccgtgctggtgataaagatggaactgcatacactcttatt
actcaaaaagaggcacgttttgctggagaattagtcaacagtttgattactgctggtcaa
aatgtgcctgcggaactgatggaccttgcaatgaaggatggaagatttcgttccaaacgt
gatgcacggaaaggaggtggaaagagggcgaaaggaaggggaggcagtggtcgaggtgtg
cgtggcgtggattatggtctgggtattggatacagtgcagaatcaagtaatgctccaact
accactgttccaagccgttctgcagcagtaaattcactaagaaccgggatgatggcacag
tttaagagcaactttgttgctgcctcatcaaatctccaaaatcaggcgttaggtaatagt
tcaggaatgaaccctaacaagaaaatggcactgccaggctttgtatctgggggaacaata
ggtggagacacaaacgcttcccggactagttcaattagtaatgctgcaacatctgttcag
aaaccgagagaagatgctagccacttgagctcaggaagctctagagataggcagagagaa
aggaggcggccttctggttgggaccgttga
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