Ipomoea nil (Japanese morning glory): 109192361 Help Entry 109192361         CDS       T04663                                  Name (RefSeq) uncharacterized LOC109192361   KO K10643   CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] Organism ini  Ipomoea nil (Japanese morning glory) Pathway ini03018   RNA degradation Brite KEGG Orthology (KO) [BR:ini00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     109192361  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:ini03000]     109192361    03019 Messenger RNA biogenesis [BR:ini03019]     109192361    04121 Ubiquitin system [BR:ini04121]     109192361 Enzymes [BR:ini01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      109192361 Transcription factors [BR:ini03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     109192361 Messenger RNA biogenesis [BR:ini03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      109192361   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      109192361 Ubiquitin system [BR:ini04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     109192361 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  zf-RING_4 RRM_1 Baculo_IE-1 zf-UDP FYVE Motif Other DBs NCBI-GeneID:  109192361 NCBI-ProteinID:  XP_019198504 LinkDB All DBs Position Un AA seq 845 aa AA seqDB search MGIMNNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCVWCWHHIMDMAEKDETEGRCPACR SIYEKEKVVAMQTNFERVTSCHANGKNKPPKAKPKTIEVKKDLTNVRVIQRKMAYVIGLP LSLADEDLLQRKQYFGQYGKVTKVSLSRTAGGAVQQFVNDSCSVYITYSKEEEAVRCIQS VHGFILDGRYLRASFGTAKYCHAWLRNMPCNNSSCLYLHCLGADEDSFGKDETAAIHTRN RVQQITGNTNNMIRRSGNVLPPPVDEFSNTGSLSTEKPPAQNAPCNSTSGSLSSSSGHMS HSLCSNDSDGYAGGPKRGTTFVDIVGRSNISEPEKDGNSSQNWKNLNLCLDTSGTSINRD DLSQDAYSDIVHFNVSSSSHLQRDQSSVEFSDETFREDLISSDGQGSQDSNGLYQRTSFL VPSHSENFRESTGGNLLLHKGTCSSSNIGMDMHKAVHKQEDEASLPLSCVNMVLNDGYHD MKFQRSAKSDMVYRSSNSFSNEEIVEHLRRIEDDILTNDVESSAFGTIENSIISNIMSMN FDDEADGHHSSSWNSLNTGQSRLSFTNQDGIPSHGVDLESFRNFSQLSKQCSAADYEGNK EHYLSKPQYQVPRTRSLAPPGFSVSSLHTPPGFCACDGAGCFHRGISGSDSSGGNAADFV DPAILSFVKGTPINSVNTTGLEMGRAFTPQQRTLEDEARLWLLMQQKSAEQDSTRLSQMF APPAPTTTHQDLRFLGRGGNEYSGVDNMYGFSSRLVDQSQNLDPSSLADLSQQKFVGGGG GGHISSRGYQHQHGLDEIQCRNEAGIGGEVERNQRFGVNYFGGGYGDLRFQAPSSGDVYT RVFGM NT seq 2538 nt NT seq  +upstreamnt  +downstreamnt atgggaatcatgaacaatgaagaagagaaaaggtgtcctctttgtgctgaggagatggac tggacggatcagcaattcaagccttgcaaatgtggttaccaggtttgtgtgtggtgttgg catcatataatggacatggcagagaaagatgagacagagggtcgttgtcctgcatgtcga tcaatttatgaaaaggaaaaagtagttgcaatgcaaacaaattttgaaagggtaacgagc tgccatgcaaatgggaaaaacaaaccaccaaaggcaaaacctaaaactattgaagtgaag aaggatcttacaaatgttagggtcattcaacggaaaatggcatatgttattgggctgcct cttagtcttgctgatgaagatctgctgcagcgaaaacagtattttggtcagtatggaaaa gttaccaaggtgtctctatcccggactgctggtggtgcagttcagcaattcgttaatgat tcctgtagtgtatatattacatattcgaaagaggaggaagctgtgagatgtattcagtca gtacatggttttatcctggatggtaggtatttgagagcttcatttggaactgcaaaatat tgccatgcctggttgagaaacatgccttgcaataactcctcctgtctatatttacattgc cttggtgctgatgaagatagttttggtaaagatgagacagctgcaattcatactaggaac agggttcaacaaattactggtaacacaaataatatgatacggcgttcaggaaatgtattg ccccctccagtggatgaattttccaatactgggagtctttctacagagaagcctcctgct caaaatgctccttgtaattcaactagtggtagtttaagttccagcagcggccacatgtct cactcgctctgtagtaatgatagtgatggatatgctggtggacccaaaagagggacaact tttgtggatattgttggtaggtctaatatctctgaaccagagaaagatggaaatagtagt caaaattggaagaatttgaatttatgcttggatacatcaggaacatccatcaatagagat gatctcagtcaggatgcatattcagatattgtgcacttcaatgtttcatcttctagtcac ctgcaaagagatcaaagttctgtagagttctcagatgaaacatttagagaagacttaata tcttcagatggtcagggatcccaggattcaaatggtttgtatcaacggacatcttttctt gttccatctcattctgaaaactttagagagagcactggtggtaatttgttattgcataag gggacttgtagctcaagtaatattggcatggatatgcacaaagctgtacataagcaagag gatgaagcttctttaccattgtcttgtgtgaatatggtattaaatgatggataccacgat atgaaatttcaaagatctgccaaatcagatatggtttatagaagttctaactcattctcc aatgaagaaattgttgagcacttgcggagaattgaggatgatatcttgactaatgatgta gaaagttctgcttttggtactatagaaaacagtataatctcaaatatcatgtcaatgaat tttgatgatgaggctgatggtcatcattcttcctcctggaattctcttaatactggtcag tcaagactctcattcacaaatcaagatggcattccaagtcatggggttgacttggagtct ttcagaaattttagtcagttatcaaaacaatgttctgctgctgactatgaaggaaacaag gagcactacctttctaagccacagtatcaagtgccaagaactcgaagtttggctccacct ggattctcagtatcctctttacatacacctccagggttttgtgcatgtgatggagcaggt tgttttcatcgtggtatctctggaagtgacagcagtggtggcaatgctgctgattttgtt gaccctgcgatattaagctttgttaagggcacaccaattaacagtgtgaacaccacagga ttagagatggggagagcttttactccacagcagagaaccctggaggatgaggcaagactc tggcttctgatgcagcaaaaatctgcagagcaagacagtacaaggctatctcaaatgttt gcccctccagctccaaccaccacccaccaggatctaaggttccttggtcggggtggaaac gagtactctggcgtggacaacatgtatgggttttcttcaaggctggtggatcaatcccaa aacttagatccttcttccttggcagatttgtctcagcagaaatttgtaggcggcgggggc ggggggcatatttcttctcgcgggtaccagcatcagcatggtttggatgaaatccagtgc aggaatgaagcgggcataggtggagaggtagagagaaatcagagatttggtgtaaactac tttggtgggggttatggcgatttgaggttccaggcgccaagctcaggcgatgtatacacc cgagtatttgggatgtaa

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