KEGG   Ipomoea nil (Japanese morning glory): 109192461
Entry
109192461         CDS       T04663                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109192461
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ini03019]
    109192461
Messenger RNA biogenesis [BR:ini03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109192461
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109192461
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 109192461
NCBI-ProteinID: XP_019198656
LinkDB
Position
Un
AA seq 128 aa
MSWASAEDIYLSTSLANYLDKKILVLLRDGRKLLGILRSFDQFANAVLEGACERLIVGDI
YCDMPLGLYVIRGENVVLIGELDLDKDELPPHMTRVSVPEIRRAQKAEREASDLKGTMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggctagtgcggaggacatttatctctctacctctcttgccaattatcttgac
aagaaaattcttgtgttgttacgagatggtcgaaagcttttggggatacttcgctctttt
gaccaatttgccaatgctgttcttgaaggagcttgtgaacgtcttattgttggtgatatc
tattgtgacatgccgttaggattatatgtaatccgtggagaaaatgtcgtcttgattggt
gagctggatttggataaggacgaacttccgccacatatgacccgcgtttcagtaccagag
atacgaagggcgcaaaaagcagaaagggaggcatcggatctcaaaggcacaatgcgaaag
aggatggaattcctcgatatggactga

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