Ipomoea nil (Japanese morning glory): 109192533
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Entry
109192533 CDS
T04663
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03013
Nucleocytoplasmic transport
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109192533
03015 mRNA surveillance pathway
109192533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109192533
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109192533
mRNA cycle factors
P-body specific factors
109192533
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
Motif
Other DBs
NCBI-GeneID:
109192533
NCBI-ProteinID:
XP_019198758
LinkDB
All DBs
Position
Un
AA seq
1193 aa
AA seq
DB search
MENAEDEGRVGGGHQEKHEDEETVARLEEFKKSIEAKMILRKSNFNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEELREGLMDELRSVNLSKFVSEAVTAICDAKLRTVDIQATVQIC
SLLHQRYKDFSPSLVQGLMRVFFPGKSADDLDSDRNSRAMKKRSTLKLLLELYFVGVVDD
CSIFVNIIKDLTSAEHLKDRDATQTNLSLLASFARQGRYLLGLPLTDQDILEEFFKGLSV
TAELKKFFRKAFQTYYDAAVELLQSEHASLRQMEHENAKILAAKGELSEESASSYEKLRK
AYDQLYRGISALAEALDMQPPVMPEDGHTTRVTSVEDISSGGVKDSSVLEALWDDEDTRA
FYECLPDLRAFVPAVLLGETEPKLSEQAPKAQEQPTELALDSDQGQSQTAAKDIAEGSAD
SSVTVEDKIDKVKDKDEKDKEKTKEGDKDKVKEKESERKVDSEKDKVKGLEGTNLDGLLQ
RLPNCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMK
DVSSMLLQLLEEEFNNLINKKDQMNIESKIRNIRFIGELCKFKIAPAGLVFSCLKACLDD
FTHHNIDVACNLLETCGRFLYRSPETMIRMANMLEILMRLKNVKNLDPRHITLVENAYYL
CKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEEYVLKCFMKV
HKGKYSQIHLIASLTASLSRYHEEFSIGVVDEVLEEIRVGLELNDFGMQQRRIAHMRFVG
ELYNYEMVDSSVIFDTLYLILVFGHGTAEQNTLDPPEDCFRIRMVITLLETCGHYFDRGS
SKRKLDRFLIHFQRYILGKGVLPLDIEFDLQDLFAELRPNMTRYASIEEVNAALLELDEH
ERTVSTERATIEKHSDRDRYSSRVTSDIPVNGQSLTNGTEENGELHEEMGDSESDSGSHT
TEHPGRDDDDEFDEENRDDGSESEDEYDDGDGAASDEDDEVHVRSKVAEVDPLEEADFER
ELRALMQESLDSRKLELRTRPTINMAIPMNVFEGPAKDHRGVEGESGDETLDEEAGGSKE
VRVKVLVKRGNKQQTKQMLIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDREEEELN
GLGNQAQSWMQSSSGSRASSNRGGNSSWDHSRSGGRHRYLHHSGGGLYYGRRR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgcagaggatgaaggccgtgttggaggtggacaccaagagaaacatgaagat
gaggaaactgttgcccgccttgaggaattcaagaaatccattgaggcaaaaatgattctc
cgcaagagcaattttaacccagaaaggccagactcaggattcctcaggacactggattcc
agcattaagcgtaacactgcagtcattaaaaaacttaagcaaattaatgaagagctgcga
gaagggttgatggatgagctgcgaagtgtcaacttaagtaaatttgtcagtgaagcagtg
actgctatttgtgatgctaagcttcgaacagtagacattcaagctactgttcagatctgt
tctttgcttcatcagcgatacaaggacttttcaccaagcctagttcaaggcctcatgaga
gtgttctttcctggaaaatctgctgatgacttagattcagacaggaattcaagggccatg
aagaagcgtagcacattaaaacttcttttggaactttattttgttggagttgtagatgat
tgtagcatctttgtaaacattattaaggatctcactagcgcagaacacttgaaggatcga
gatgcaacccagacaaatttgtccctccttgcaagttttgctcgacaagggagatatctg
cttggtcttccactgactgaccaagatattcttgaagagtttttcaaaggccttagtgtc
acagcagagctgaaaaagttctttaggaaggcatttcaaacatattatgatgcagctgtt
gaacttcttcagtcagagcatgcttcacttcgccaaatggagcatgaaaatgcaaagatt
ttggctgctaaaggtgaactgagtgaggaaagtgcctcttcatatgaaaagctgcggaaa
gcttatgaccagctgtaccgtggtatctctgctttagcagaagcacttgacatgcaacct
cctgtgatgcctgaggatggtcacacaaccagggtaacatcagtggaagacatatcttct
ggtggtgttaaagattcttctgtcttagaagccctgtgggatgatgaggatacaagggct
ttctatgagtgtttgccagatctcagggcatttgtccctgctgttttattgggagaaaca
gaacccaagttgagcgagcaggctccaaaggctcaagaacaacccactgaattggcattg
gattcagatcaaggtcagagtcagacagctgcaaaagacattgcagagggttctgcagat
tctagtgtgacagtggaggataagattgacaaagtcaaggataaagatgaaaaagataaa
gaaaagaccaaagaaggagacaaagataaagtgaaagaaaaggaatcagaaagaaaagta
gacagtgaaaaggataaagttaaaggtctcgaaggaaccaatttggatggtttactgcag
cggctcccgaattgcgttagccgtgacttgatagaccagttgactgtggaattttgctac
ttgaattctaaatctaacaggaagaagcttgtaagggctctgttcaatgttcctagaact
tctctggaattgttgccatactattcacgtatggttgcaacactctctacttgcatgaag
gatgtgtcttccatgcttttacagttgttagaggaagagttcaacaatttgataaataag
aaggatcaaatgaacatagaaagcaaaataaggaatattcgttttattggagaactctgc
aagtttaaaattgcaccagctggtctggttttcagttgtctaaaggcttgtttagatgat
ttcactcatcacaatattgatgttgcttgcaatcttcttgaaacctgtggtcgttttctc
taccgctctcctgagaccatgattcgcatggctaacatgttagagatattgatgcggttg
aagaatgtcaaaaatttggatccccgccatatcaccttagtggagaatgcatattacttg
tgcaagccacctgaaaggtctgcacgagtttctaaagttcgtccacctttgcatcagtat
ataagaaaactccttttctcggatcttgacaaatcttctatagagcatgtactaagacaa
cttcggaaacttccttggagtgaatgtgaggaatacgttttgaagtgctttatgaaggtg
cacaaggggaagtacagtcagattcacttgattgcatcacttaccgctagtttgagccgg
tatcatgaagaattttctattggtgttgttgatgaggttttagaggagataagggtggga
ttagagttgaatgactttgggatgcagcagaggcgcattgctcacatgcggtttgtagga
gaactgtataactatgaaatggtggactcatcagtcatttttgatacactctatctgatt
cttgttttcggccatggaacagcagagcaaaacacactggatccaccagaggattgtttc
cgtatcaggatggtcattacacttcttgaaacttgtggacattactttgatagaggttca
tcgaagaggaaacttgatcggttcttaattcatttccagagatacatattgggcaaaggc
gtgttgcccctggatattgagtttgacttgcaggacttgtttgctgaattacgccccaac
atgactcgatatgcctcaattgaagaagtcaatgcagcacttctggaacttgatgaacat
gagcggacagtttcaactgaaagggccactattgagaagcattcagacagagacaggtat
tctagcagggtgacctctgacatacctgttaacgggcaaagccttacaaatggtactgaa
gaaaatggtgagctgcacgaagaaatgggtgacagtgaaagtgattctgggagtcacact
actgagcatccaggacgtgatgatgatgatgaattcgatgaagagaatcgtgatgatggg
tctgagagtgaggatgagtatgatgatggtgatggagctgcttctgatgaagatgatgaa
gtacatgtcaggtcaaaagttgctgaagttgatcctctggaggaggctgactttgagcgg
gaactgcgggctttaatgcaggaaagtttggattcacgaaaattggagctgcggacgagg
ccaacaataaacatggcgataccaatgaatgtgtttgaggggccagcaaaggatcatcgt
ggagttgaaggagaaagcggggatgagacattggatgaagaagcaggaggaagcaaggag
gttcgagttaaggttcttgtgaagcggggcaacaagcaacaaacaaagcagatgctcatc
cctcgtgattgctctctcatacagagcacaaagcagaaagaagcagccgagctggaggaa
aaacaagatatcaagcggttagtgttggagtataacgacagagaagaggaggagcttaat
ggcctgggaaaccaagctcagagctggatgcaaagcagcagcggtagcagagcttcttca
aatcggggcggcaactcctcgtgggatcacagccggagcggtggacgtcaccgctacctg
caccattccggcggcggcctatattatggcagaagaagatga
DBGET
integrated database retrieval system
