Ipomoea nil (Japanese morning glory): 109193490
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Entry
109193490 CDS
T04663
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03030
DNA replication
ini03420
Nucleotide excision repair
ini03430
Mismatch repair
ini03440
Homologous recombination
ini03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109193490
03420 Nucleotide excision repair
109193490
03430 Mismatch repair
109193490
03440 Homologous recombination
109193490
03460 Fanconi anemia pathway
109193490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ini03000
]
109193490
03032 DNA replication proteins [BR:
ini03032
]
109193490
03400 DNA repair and recombination proteins [BR:
ini03400
]
109193490
Transcription factors [BR:
ini03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109193490
DNA replication proteins [BR:
ini03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109193490
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109193490
MMR (mismatch excision repair)
109193490
DSBR (double strand breaks repair)
HR (homologous recombination)
109193490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
PMT_C3
Motif
Other DBs
NCBI-GeneID:
109193490
NCBI-ProteinID:
XP_019199875
LinkDB
All DBs
Position
Un
AA seq
626 aa
AA seq
DB search
MEISVSQDAISTILANPSPESGSDLPEIVVQVVDLKPTGNRYMFTASDGKMKLKAILQSS
MSSEVISGAIQNLGLVRILDYTLNDIPMKNEKYLIVTKCEAVSPSLEAEYKAEAKSEGAG
IILKTKQELDVKSVQESETVGITLKPKEETVAKSAAQIVHEQNGNMAPTARMAMTRRIHP
LVSLNPYQGNWTIKVCVTSKGNMRFYKNARGEGCVFNVELTDQDGTQIQATMFNEAAKKF
YDKFELGKMYYISKGTLRVANKQFKTVQNDYEMTLNENSQVEEASNEAAFIPETKFNFVP
IDELGPYVNGRELVDIIGVVQSVSPTMSIRRKSNNEMIPKRDITIADETKKTVVVSLWND
LATSVGQELLDMADKSPVVAIKSVKVGDFQGVSLSALSKSTVLVNPDVPKAKDLRAWFDA
EGKETTLASVGSGLSPSSKNGSWSSQSERVSLLHITSNSSLGEGKPVFFRIKASISYIKP
DQAMWYRGCKTCNKKVTEAIGSGYWCEGCQKNDEECRLRYIMVMKVSDASGEAWLSVFNE
QAEKIIGCTADELDRVKSQDGESVFQEKLKEATWTPYLLQVSVAVQEYNNEKRQRITVRG
VAPVDYVEESKYMLEEMAKMNIIASA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggagatttcagttagccaagatgccatatccaccattctagcaaacccttcgccggaa
tctgggtctgacctaccggagatagtcgtccaagtcgtggatctaaagccaaccggtaac
cgatacatgtttacggccagtgatgggaagatgaagcttaaggcgattttgcagtctagt
atgtcatccgaggtcatctctggagctattcagaacttgggccttgttcggattcttgat
tatactctcaatgacatccccatgaagaatgaaaagtacctaattgtaacaaaatgtgag
gctgtgtctccttcccttgaggctgaatacaaggctgaggctaaaagtgaaggggctggc
attatattgaagacaaaacaggaactagatgttaaaagtgttcaggaaagtgagacagtt
ggcattactttaaagccaaaggaagaaactgtagccaaatcagctgcacagattgtacat
gagcagaatggaaacatggcaccaacagcacgcatggcaatgaccaggagaattcatcca
cttgtttccttgaacccataccaaggaaattggacaattaaagtttgtgttactagcaag
ggaaacatgcggttttacaagaatgctaggggagaaggctgtgtcttcaatgttgagtta
acagaccaggatggcacacaaattcaagcaacaatgtttaatgaagctgcaaagaagttc
tatgacaagtttgaattgggtaaaatgtattacatttcaaagggaactttaagagtggct
aacaagcagttcaagacggtacagaatgattatgaaatgaccctgaatgagaactctcaa
gtggaagaggctagcaatgaagctgcttttattcctgaaactaaattcaattttgtccca
attgatgaactgggtccgtatgtaaatggacgggagttagttgatattattggtgttgtt
caaagtgtttctcctacaatgagtatccggaggaagagtaataatgagatgattccgaag
cgtgacataactattgctgatgagacgaaaaagactgttgtggtgtctctatggaatgat
cttgccaccagtgtaggacaagaattgctagatatggctgacaaatctccagtagttgca
atcaaatctgttaaagttggagacttccaaggtgtttctttatcagcattgagcaagagt
acagtgctggtgaatccagatgtacccaaagcaaaagacttgagagcatggtttgatgct
gaaggtaaagaaacaacattggcctctgttggttctggtttgagcccctcttccaaaaat
ggatcatggtccagtcagtctgaaagggtttccctgcttcatataaccagtaactcatcc
ctgggtgagggcaagcctgtgtttttcagaattaaggcaagtatcagttacatcaaaccc
gatcaagctatgtggtatcgtgggtgcaagacatgcaacaagaaagttactgaggccatt
gggtctggctactggtgtgaaggttgccagaagaatgatgaagagtgcagactaagatat
ataatggtgatgaaagtttctgatgcaagtggtgaagcttggctatctgttttcaatgaa
caggctgagaagataataggctgtactgcagatgaactagatagggtgaaatctcaggat
ggagagagtgttttccaagagaagctgaaagaagccacatggactccttaccttttacaa
gttagtgttgcagttcaagagtacaacaatgagaaaaggcaaaggataacagtgagaggt
gttgcccctgttgattatgtagaggaatccaagtacatgcttgaagaaatggctaagatg
aatatcattgcttctgcatga
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