Ipomoea nil (Japanese morning glory): 29082155 Help Entry 29082155          CDS       T04663                                  Symbol rpoB, IPN_cp074 Name (RefSeq) RNA polymerase beta subunit   KO K03043   DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Organism ini  Ipomoea nil (Japanese morning glory) Pathway ini03020   RNA polymerase Brite KEGG Orthology (KO) [BR:ini00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     29082155 (rpoB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ini03021]     29082155 (rpoB)    03400 DNA repair and recombination proteins [BR:ini03400]     29082155 (rpoB) Enzymes [BR:ini01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      29082155 (rpoB) Transcription machinery [BR:ini03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      29082155 (rpoB) DNA repair and recombination proteins [BR:ini03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       29082155 (rpoB) SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 Motif Other DBs NCBI-GeneID:  29082155 NCBI-ProteinID:  YP_009295096 UniProt:  U3RAG5 LinkDB All DBs Position CP AA seq 1062 aa AA seqDB search MTTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDIDQEIEFQLFVETYQLVEPLIKERD AVYDSLTYSSELYVSARLIWKTSRDMQEQTIFIGSIPLMNSQGTSIVNGIYRIVINQILQ SPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISILVLSSAMG SNLREILENVCYPEIFLSFLSDKEKKKIGSKENAILEFYQQFACVDGDPIFSESLWKELQ KKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDLLAAADHLIGLKFGMGTLDDMNH LQNKRIRSVADLLQDQFGLALVRLENAVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESF FGLHPLSQVLDRTNPLTQIVHGRKFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSE GINVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLYLSPGRDEYYMVAAGNSLALN QDIQEDQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNM QRQAVPLSRSEKCIVGTGVERQAALDSGALVIAEREGRVVYTDTDKILFSGDGETLSIPL VMYKRSNKNTCMHQKPQVQRGKCIKKGQILADGAATVEGELALGKNVLVAYMPWEGYNSE DAVLISERLVYEDIYTSFHIKKYEIQTHVTSQGPEKVTNEIPHLEAHFIRNLDKNGIVKQ GSWVETGDVLVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKVPIGGRGRVIDV RWIQKKGGSSYNPEMIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSV DLVFNPLGVPSRMNLGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKVVFSELYEAS KQTANPWAFEPEYPGKSRIFDGRTGNPFEQPVLIGKPYILKLIHQVDDKIHGRSSGHYAL VTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIVGGT IPNPKDAPESFRLLVRELRSLALELNHFLVSEKNFQIHRKEA NT seq 3189 nt NT seq  +upstreamnt  +downstreamnt atgactacaatacccggatttaatcagatacaatttgaaggattttgtaggttcattgat caaggtttgacggaagaactttctaagtttccaaaaattgaagatatagatcaagaaatt gaatttcaattatttgtggaaacatatcaattggtagaacccttgataaaggaaagagat gctgtgtatgactcactcacatattcttctgaattatatgtatcagcgagattaatttgg aaaacaagtagggatatgcaagaacaaacaatttttattggaagcattcctctaatgaat tcccagggaacttctatagtaaatggaatatatagaattgtgatcaatcaaatattgcaa agccccggcatttattaccggtcagaattggaccataatggaatttcggtctataccggc acaataatatcagattgggggggaagatcagaattagaaattgataggaaagcaaggata tgggctcgtgtgagtaggaaacaaaaaatatctattctagttctatcatcagctatgggg tcgaatctaagagaaattctagagaatgtctgctatcctgaaatttttttatcttttctg agtgataaggagaaaaaaaaaattgggtcaaaagaaaacgccattttggaattttatcaa caatttgcttgcgtagacggggatccaatattttctgaatccttatggaaggaattacaa aagaaattttttcaacaaagatgtgaattgggaaggattggtcgacgaaatatgaaccga agactgaaccttgatataccccagaacaatacatttttgttaccgcgagatttattggca gccgccgatcatttgattggactgaaatttggaatgggtacacttgacgatatgaatcat ttgcaaaataaacgtattcgttctgtagcggatcttttacaagatcaattcggattggct ctagttcgtttagaaaatgcggttcgagggactatatgtggagcaattcggcataaattg atacccactcctcagaatttggtaacttcaactcccttaacaactacttatgaatccttt ttcgggttacacccattatctcaagttttggatcgaactaatccattgacacaaatagtt catggcagaaaatttagttctttgggccctggggggctgacagggcgcactgctagtttt cggatacgagatatccaccctagccactatgggcgtatttgcccaattgacacatctgaa ggaatcaatgttggacttattggatccttagcaattcatgcgaggattgggcattgggga tctctagaaagcccgttttatgaaatttccgagaggtcaacaggggtacggatgctttat ttatcaccaggtagggatgaatactatatggtagcggcaggaaattctttggccttgaat caggatattcaagaagaccaggttgttccagctcgataccgtcaagaattcctgactatt gcatgggaacaagttcatcttcgaagtatttttcctttccaatatttttctatcggagct tccctcattccttttatcgaacataatgatgcgaatcgagcgttaatgagttctaatatg caacgtcaagcagttcccctttctcggtccgagaaatgcattgttgggacgggggtggaa cgacaagcagctctagattcaggggctcttgttatagccgaacgtgagggaagggtcgtt tataccgatactgacaagatccttttctctggtgatggagagactctaagcattccatta gttatgtataaacgttccaacaaaaatacttgtatgcatcaaaaaccccaggttcagcgg ggtaaatgtattaaaaagggacaaattttagcggatggtgctgctaccgttgagggcgaa cttgctctggggaaaaacgtattggtagcttatatgccgtgggagggttacaattctgag gatgcagtgctcattagtgaacgtttggtatatgaagatatttatacttcttttcacata aagaaatatgaaattcaaactcatgtgacaagccaaggccctgaaaaagtcactaatgaa ataccacatttagaagcccatttcattcgcaatttagacaaaaatggaattgtgaagcag ggatcttgggtagagacgggtgatgttttagtaggtaaattaacaccccaggtggtgaaa gaatcgtcgtatgcaccggaagatagattgttacgagccatacttggcattcaggtatct acttcaaaagaaacttgtctaaaagttcctataggtggtagaggtcgggttattgatgtg aggtggatccagaagaaggggggttccagttataatcccgaaatgattcgtgtctatatt ttacagaaacgtgaaatcaaagtgggagataaagtagctggaagacatggaaataaaggt atcatttcaaaaattttacctagacaagatatgccctatttacaagatggaagatccgtt gatctggtcttcaacccattaggagtaccttcacgaatgaatctaggacagatatttgaa tgttcactcgggctagcagggagtctgctagatagacattatcgaatagcaccttttgat gaaagatatgaacaagaagcttcgagaaaagtagtcttttctgaattatatgaagccagt aaacaaacagcgaatccatgggcatttgaacctgaatatccaggaaaaagcagaatattt gatggaaggacggggaatccttttgaacaacctgttctaatagggaagccttatatcttg aaattaattcatcaagttgatgataaaatccatgggcgttccagtggacattatgcgctt gttacacaacaaccccttagaggaagagccaaacagggggggcaacgggtaggagaaatg gaggtttgggctctagaaggatttggggttgctcatattttacaagagatgctgacttat aaatcagatcatattagagctcgccaggaagtacttggtactacgatcgttggaggaaca atacctaatcccaaagatgctccagaatcttttcgattgctcgttcgagaactacgatct ttagctctggaactgaatcatttccttgtatctgagaagaacttccagattcataggaag gaagcttaa

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