Intestinibacillus sp. NTUH-41-i26: RX717_00755
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Entry
RX717_00755 CDS
T09461
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
int
Intestinibacillus sp. NTUH-41-i26
Pathway
int03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
int00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RX717_00755 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
int03400
]
RX717_00755 (mfd)
Enzymes [BR:
int01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RX717_00755 (mfd)
DNA repair and recombination proteins [BR:
int03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RX717_00755 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WOC75557
UniProt:
A0AA97HAP1
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All DBs
Position
157697..161155
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AA seq
1152 aa
AA seq
DB search
MTEITKSITYLKEYKKLKEALLAGKTPLLAVGLSAIHKAHLAAALGAETGRPVFVLTDDD
NAANRFASDLHAFSEKPVTVLPARDLVMADVAGVSRGYEQKRLAALDGLPEARFAVASVQ
AAALRTLPPDALGSASVTIRTGQEAPLDGLAQELTRAGYERCTQVEGAGQFSVRGGILDV
FPPQAEHPYRVEFWDDEVDSIATFDVGSQRRLDTAEALRCLPCMETLPALAKGGAAGLAK
AVLGLLSTRRKKHPDLAANLERDAERLRETGGLPAADKYLPLVYPEPASAFDYLPENALV
LIEDTPRLRDAARDFHARIADDVTALLERGELPPGLDGYALDFASLCRVPRTVLRLDSFL
NNVPELVPQHLENFVANQMNAYGGNLDMAAADIRAYIQQGRAVAVVCGSGLRCRNMCDAL
TGAGIRAAVSDLLPKGGHVSVLEGTLSAGFEYPDLGLVVMTEGQVLARRKKAPVKKSNRD
RVKSFTDLMPGDLVVHEHHGIGRFVGMERMTVDGAERDFIKIAFAGTDFLYVPATSLDLI
SKYIGGGENERVRLNKLGGADWSKAKARAKAAAKKLAEGLIRLYAERAKVRGFAFPPDDE
WQREFEDAFPYEETEDQLRCIAEIKEDMQSDRPMDRLLCGDVGFGKTEVALRAVMKCVLA
GKQAAILVPTTVLARQHYLTALQRFQGHPLTIELLTRYKTGSEQTRLLQKLEAGSVDVVI
GTHKLFNKRIKFKDLGLLVVDEEQRFGVSHKEALKELSKTVDVLTLSATPIPRTLNMALS
GIRDMSSIEEPPLDRHPVQTYVLEQNDGVLLDAIRRELARGGQVYYLHNHVESIARCANL
LQQRLPEARIGVVHGKMTQKEIAAAMNAMADGETDILVCTTIIETGIDIPNANTLIIENA
DNLGLAQLHQIRGRVGRSSRHAYAYLCYRRGKALSEIAQKRLSAIREYAAFGSGFKIAMR
DLEIRGAGNVLGPEQSGHMMSVGYDLYLKLLEEAVQEEKGEMPKPRVDCAAELLLSANLP
AAYVPDAGQRVDLYRRIALIRTEEQKSDMLDELIDRFGEPPAEAVALLDIALLRSQASGQ
GIAEIKQQDGRLLLTFAETDFARLSVLCGDSDFRGRLLLNAGSSPYLSLRLNRGEESLAM
AQTLVAKYAATA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaattacaaaaagtataacatatctaaaagaatacaaaaagttaaaagaagcc
ctgcttgccggaaaaacaccgctgcttgcagtcggcctgtcggcgatccacaaagcgcat
ctggcggcggcattgggagcggagaccggccggccggtgttcgtactgaccgatgacgac
aacgcggccaaccgctttgcctccgacctgcatgcgttttcggaaaagccggtgaccgtc
ctgccggcgcgcgaccttgtcatggctgatgtggcgggcgtgtcgcgcggctatgagcag
aagcggctggcggcgctggacggtctgccggaggcgcggtttgcggtcgcctcggtgcag
gccgcggcgctgcggacgctgccgcccgacgcgctcgggagtgcgtcggtgaccatccgc
acggggcaggaggccccgctggacggtctggcgcaggagctgacccgcgcgggctatgag
cggtgtacgcaggtcgaaggcgcggggcagttttcagtgcgcggcggcattctggatgta
ttcccgccgcaggcggagcacccataccgcgtggaattctgggacgacgaggtcgattca
atcgcaacctttgacgtgggtagccaacggcggctggacacggcggaggctctgcgctgt
ctgccgtgcatggagacactgcccgcgctggccaagggcggcgcggcggggctggcaaag
gctgtgttgggtctgctctccacccgccgcaaaaagcatcccgacctggcggccaacctg
gaacgcgacgcggagcgcctgcgcgagaccggaggactgcccgcagcggacaagtacctg
ccgctcgtctatccggagcccgcgtccgcgttcgattacctgccggaaaacgcgcttgtg
ctcattgaggacacgccgcgcctgcgggacgcggcgcgcgatttccacgcccgcatcgcg
gacgatgtgaccgccctgctcgagcgcggcgagctgccgcccgggctggacggatatgcg
ctcgattttgccagcctgtgccgcgtgccgcgtacggtgctgcggttggacagcttcctg
aacaacgttcccgaactggtgccgcagcatctggaaaactttgtagccaaccagatgaac
gcctacggcggcaatctggacatggcggcggcggatatccgcgcctatatccagcaggga
cgcgcggtggcggtggtctgtggcagcgggttgcgctgccgcaacatgtgcgacgcgctg
acgggcgcgggcatccgcgcggcggtcagcgacctgctgcccaaggggggacacgtcagc
gttctggaggggacgctgtccgcgggctttgagtacccagacctcgggctggtcgtgatg
accgaggggcaggtgcttgcgcgccgcaaaaaggcgccggtcaaaaaatccaaccgcgac
agggtcaagtcgtttaccgacctgatgccgggcgacctggtggtgcatgagcaccacggc
atcggccggttcgtcggcatggagcgcatgactgtggacggcgcggagcgtgattttatc
aagattgcgtttgccggaacggatttcctgtatgtgccggcgacctcgctcgatctgatc
tccaaatacatcggcggcggggagaacgagcgcgtgcgcctgaacaagctgggcggcgcg
gactggtccaaggccaaggcgcgcgccaaggccgcggccaagaagctggccgaggggctg
atccggctctatgccgagcgcgccaaggtccgcggcttcgctttcccgccggacgacgaa
tggcagcgggaatttgaggacgcgtttccctatgaggaaaccgaggatcagctccgctgt
atcgcggaaatcaaggaggatatgcagtccgatcggccgatggaccgcctgctgtgcggc
gacgtgggcttcggcaagaccgaggtcgcgctgcgcgcggtgatgaagtgcgtgctggcg
ggcaagcaggccgccatccttgtgccgacaaccgtgctggcgcgccagcattacctgacc
gcgctgcagcgcttccaggggcatccgctgacgatcgagctgctcacccgctacaagact
ggctcggagcagacgcgtctgctgcaaaaactggaggccggctcggtggacgtggtgatc
ggcacgcacaagctgttcaacaagaggatcaaattcaaggacctggggctgctcgtcgtg
gacgaggagcagcgcttcggcgtttcccataaggaggcgctcaaggagctttccaaaacc
gtggacgtgctgacgctgtcggccacgcctatcccgcgcacgctcaatatggctctgtcc
ggcattcgggatatgtcgtccatagaggagccgccgctcgaccgccatccggtacagacc
tatgttttggagcagaacgacggtgtgctgctcgacgcgatccggcgtgagctggcgcgc
ggcgggcaggtatactacctgcacaaccatgtggaatccatcgcgcggtgcgcgaacctg
ctccagcagcgcctgccggaagcgcgcatcggcgtggtgcatggaaaaatgacgcagaag
gagatcgccgctgccatgaatgccatggcggatggcgaaaccgatatcctagtctgcacg
actatcatcgaaaccggtatcgacattccaaacgcaaatacgctgattatcgagaacgcg
gataacctggggctggcccaactgcaccagatacgcgggcgcgtgggccgctcgtcgcgc
cacgcctatgcctacctgtgttaccggcgcggcaaggcgctttccgagatcgcgcagaag
cgcctgtccgccatccgcgagtacgcggcgttcggttcgggatttaagatcgccatgcgc
gatctggagatccgcggcgcgggcaacgtgctcggccccgagcagtccggtcatatgatg
agcgtgggctacgacctgtatctcaagctgctcgaggaggccgtgcaggaggaaaagggc
gaaatgcccaagccgcgcgtggactgtgcggccgagctgctgctctccgcgaacctgccc
gccgcctatgtgccggacgcgggccagcgcgtggacctgtaccgccgcatcgcgcttatc
cgcacggaggagcagaagagcgacatgctcgacgaactgatcgaccgcttcggcgagccg
cccgcggaggcggtggcgctgcttgatatcgcgctgctgcgcagccaggcgagcgggcag
ggtattgccgagatcaaacagcaggacggccgtctgctgctcacctttgcggaaaccgac
tttgcgcgcctgtccgtactgtgcggggacagcgacttcaggggccgtctgctgctgaac
gcaggctcgtcgccgtacctgtcgctgcggctgaaccgcggggaggagtcgcttgccatg
gcgcagacactggtggcgaaatacgcagctaccgcataa
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