Intestinibacillus sp. NTUH-41-i26: RX717_06240
Help
Entry
RX717_06240 CDS
T09461
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
int
Intestinibacillus sp. NTUH-41-i26
Pathway
int03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
int00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RX717_06240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
int03019
]
RX717_06240
Enzymes [BR:
int01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RX717_06240
Messenger RNA biogenesis [BR:
int03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RX717_06240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WOC76571
UniProt:
A0AA97DVS5
LinkDB
All DBs
Position
1222598..1224229
Genome browser
AA seq
543 aa
AA seq
DB search
MKFQELKIEKNILKALEEAGYEQPTPIQQKAIPPVLDGHDLMGCAQTGTGKTCAFSVPII
QRLCAQGETGAVRALILTPTRELALQIYENVCQYARYTRCTAAVVFGGVSQVPQVEALQR
GADILIATPGRLWDLMGQKLVSLDKVECFVLDEADRMLDMGFFPDVKRIIKYLPEERQTL
LFSATIPQEIASLANRLLKNPARISITPSAKPVEKIEQKVYLVEKAEKRELLTEVIRQSN
VHQTLVFTRTKHGADRVARDLNRAGIKSKAIHGDKSQNQRQTALADFKACKIAVLVATDI
AARGIDINELPLVINFELPNIPETYVHRIGRTGRAGQEGTAVSFCDRSERPYLADIEKLI
GKKIPVAGEIPHEEKPAASAERESGQRKTTNTRTRRKLVSENAPAEAVAAEAEREKAEKQ
KARKAAPAKRAPRREKAAELQLEQRAKAAAPRARRTAAASVSRGRGRRNDPYARFEKNEP
RVDAHTPSRAYALSAEAAERIRKKVEAALSARGQKAEKSPAAQPQEKKSATARRHSPRRR
SGK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttcaagaactaaagatcgaaaaaaatattctcaaagcgctggaagaggcgggc
tatgagcagccaacgccgatccagcagaaggcgattccgcccgttctggacggacacgac
ctgatgggctgcgcgcagaccggtacgggtaagacgtgcgcgttttccgtgccgatcatc
caacgcttatgcgcgcagggggaaacgggcgcggtgcgggcgctgatcctgacgccgacc
cgcgagttggcgctgcagatttatgaaaatgtgtgtcagtacgcgcgctatacgcgctgc
acagccgcggtggtgttcggcggcgtttcccaggtgccgcaggtggaagcgctgcagcgc
ggcgcggatatcctgatcgcaacacccggccggctgtgggacctgatggggcagaagctg
gtttcgctggacaaggtggaatgctttgtgctggatgaggcggaccgcatgctggatatg
ggctttttcccagatgtcaagcgcattatcaagtatctgccggaggaacggcagacgctg
ctgttctccgcgacaattccgcaggagattgcgtcgctggccaacaggcttttgaagaat
ccggcaaggatctcgattacgccgtccgccaagccggtcgagaaaattgagcaaaaggtg
tatctggtcgaaaaagcggaaaagcgggaacttttgaccgaggtcatccgtcaaagcaac
gtgcatcaaacgctggtctttacgcgcaccaagcacggtgcggaccgtgtggcgcgcgac
ctgaaccgcgcgggcatcaagtccaaggcgatccacggcgataaatcgcagaaccagcgc
cagaccgcgctggcggatttcaaggcctgcaagattgcggtgctggtcgcgaccgatatt
gcggcgcgtggcatcgatatcaacgagctgccgcttgtgatcaatttcgagctgcccaat
attccggaaacgtatgtccaccgcattggccgcacgggccgcgccggacaggaggggacg
gcggtttcgttctgtgaccggagcgagcggccgtatcttgcggatatcgaaaagctgatc
gggaaaaagataccggtcgcgggcgagatcccgcatgaggaaaagccagcggcctccgca
gagcgggagagcggccagcgcaaaacgacgaatacccgcacccgccgcaagctggtttcg
gaaaatgcccccgcagaggcggtagcggctgaagcggagcgggagaaggccgagaagcag
aaggcgcgcaaagccgcgcctgccaagcgtgcgccgcgtagggaaaaagcggcggagctg
cagctggagcagcgcgcgaaagcggccgcaccgcgcgcgcggcgcaccgccgccgcatcc
gtatcccgcggacgtggacggagaaacgacccatacgcgcggtttgaaaaaaatgaaccg
cgggtggacgcgcataccccgtcccgcgcctatgcgctgagcgcggaggcggcggaacgt
atccgcaaaaaggtggaggccgcgctgtcggcccgcggacagaaggcggaaaaatctcct
gcggcgcagccgcaggagaagaaaagcgcaacggcgcgccgccacagcccgcgccgccgc
agcgggaaatag
DBGET
integrated database retrieval system
