Intestinibacillus sp. NTUH-41-i26: RX717_09280
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Entry
RX717_09280 CDS
T09461
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
int
Intestinibacillus sp. NTUH-41-i26
Pathway
int03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
int00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RX717_09280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
int03021
]
RX717_09280 (rpoC)
03400 DNA repair and recombination proteins [BR:
int03400
]
RX717_09280 (rpoC)
Enzymes [BR:
int01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RX717_09280 (rpoC)
Transcription machinery [BR:
int03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RX717_09280 (rpoC)
DNA repair and recombination proteins [BR:
int03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RX717_09280 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD26
Motif
Other DBs
NCBI-ProteinID:
WOC74218
LinkDB
All DBs
Position
complement(1811364..1814897)
Genome browser
AA seq
1177 aa
AA seq
DB search
MGYHTFNAIKIGLASPDLIREWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECH
CGKYKKVRFKGKICDKCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDIS
PRVLEKVLYFANYIVIDPGDTPLMKKQILNEAEYRDMREKYEDDFRAGMGAEAIKELLQE
LDLDQLSKELTAELRESSGQKRLRIIKRLEVVESFRLSHNRPEWMIMDVVPVIPPEIRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRR
GRPVTGPNNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKIYQCGLPKEM
ALELFKPFVMKKLVEDGTASNIKSAKKMVERAKPEVWDVLAGIIKGHPVMLNRAPTLHRL
GIQAFEPVLVEGRAIRLHPLVCTAFNADFDGDQMAVHVPLSAEAQAEARLLMLSANNLLK
PQDGKPVTVPSQDMVLGSYYLTIDRDTEPGTGKVFRDADEALMAYAEGVVGIHAPIKVRV
TKEINGKMESRIVDATPGRLIFNERIPQDLGFVDRSDPDKKFDLEIMFTCGKKELGKIID
KCIHVHGFNVTAEVLDSIKAMGYKYSTKGALTVAVADMLVPDDKATLIHESEQQVAKIDK
KYKRGFITDDERYRLTVAEWESTTKKVTAKLQENMREQRFNPIHMMADSGARGSINQIRQ
LAGMRGLMASTSGKTIEIPIKSNFREGLSVLEYFISARGARKGLADTALRTADSGYLTRR
LVDVSQDVIIREEDCGAAKGIWVEDIKEGNQVIEPLRERLLGRYPVDDICDPATGALIVP
KSKMMNDADADAIIAAGITRVQIRSVLECRARKGVCSHCYGMNLAMGTPVGKGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKKAATLAEISGVITIEES
KRTTVKTVNIVNSETGDMRSYQLASSSGIRVTDGQEVEQGFQLNEGSLNPHDILRILDPR
AVHDYEIKEVQKVYRQQGVDINDKHIEVIVRQMMRKVRVEDAGDAEVLPGSVMDLLEFED
YNQKVQDRIDAGEEGLRLAVAEPTLMGITKASLATDSWMSAASFQETTRVLTDAAIKGKV
DPLMGLKENVIIGKLIPAGSGMTEYCDGHYEQTVDLG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgggatatcatacgtttaacgccatcaagatcggcctggcctcgcccgacctgatccgc
gagtggtcgtatggtgaagtcaaaaaacccgaaaccattaactaccgcacgctcaagccg
gaaaaggacggcctgttctgcgagcgcatctttggccccacgaaggattgggagtgccac
tgcggcaaatataagaaagtccgcttcaagggaaagatctgcgacaaatgcggcgtcgag
gtcacgcgcgccaaggtccgccgcgagcgcatgggccatattgagctggccgcgcccgtc
tcgcacatctggtacttcaagggcatcccgtcccgcatgggtctgatcctggatatcagc
ccgcgcgtgctggaaaaggtcctgtactttgccaactatattgtgatcgatccgggcgat
accccgctgatgaaaaagcagatcctaaacgaggcggagtaccgcgacatgcgcgaaaag
tatgaggacgatttccgcgccggcatgggcgcggaggcgatcaaggaactgctgcaggag
ctggatctcgaccagctctccaaggagctgaccgcggaactgcgcgaatcctccggacag
aaacgcctgcgcatcatcaagcgtctggaggtcgtagagtcgttccggctgtctcacaac
cgtccggaatggatgatcatggacgtggttccggtcatcccgccggagatccgccccatg
gtgcagctcgacggcggccgcttcgcgacctcggacctcaacgacctgtaccgccgcgtc
atcaaccgcaacaaccgcttaaagcgcctgctggagctgggcgcgcccgatatcatcgtg
cgcaatgagaagcgcatgcttcaggaggcggtggatgcgctgatcgacaatggccgccgc
ggccggccggtcactggcccgaacaaccgtgcgctcaagagcctgtccgacatgctcaag
ggcaagcagggccgcttccgccagaacctgctcggcaagcgcgtcgactactccggccgt
tcggttatcgttgtcggtccggatctgaagatttaccagtgcggcctgcccaaagagatg
gcgcttgagctgttcaagccgtttgtaatgaaaaagctggtggaggacggaacggcgtcc
aatatcaaatccgccaagaagatggtcgagcgcgccaagcccgaggtttgggatgtgctc
gccggtatcatcaagggtcacccggtcatgctcaaccgcgcgccgacgctgcaccgcttg
ggcatccaggcgttcgagccggtgctggtcgagggccgcgccatccgtctgcatccgctc
gtctgtacggcgttcaacgcggactttgatggcgaccagatggcggtgcatgtgccgctg
tccgcagaagcgcaggccgaggcgcgccttcttatgttgtccgccaacaaccttctcaag
ccgcaggacggcaagccggtcaccgtaccgtcgcaggatatggtgctgggctcctattac
ctgaccatcgaccgcgataccgagccgggtaccggcaaggtgttccgcgacgccgatgaa
gcgctgatggcttatgcggagggcgttgtcggcatccacgcgccgatcaaggtgcgcgtg
accaaggagatcaacggcaagatggagagccgcattgtggacgcgacgccgggccgcctg
atcttcaacgagcgcattccgcaggacctcggctttgtcgaccgctcggatccggacaag
aaattcgatctggagatcatgttcacctgcggcaaaaaagagctgggcaagatcattgac
aagtgcatccatgtgcatggcttcaatgtaacggccgaggttctcgactcaatcaaggcg
atgggctacaaatattcgaccaagggcgcgctgaccgttgcggtggccgatatgctggtg
ccggacgacaaggcgaccctgatccatgaatccgagcagcaggtcgccaagatcgataaa
aaatacaagcgcggttttatcacggacgacgagcgctaccgcctgacggtcgccgagtgg
gaatccacgaccaaaaaggttaccgccaagctgcaggaaaacatgcgcgagcagcgcttc
aacccgatccacatgatggccgattctggcgcgcgtggttcgatcaaccagatccgccag
ctcgccggtatgcgcggcctgatggcgtccacctcgggtaagacgattgagattccgatc
aagtccaacttccgcgagggtctctcggttttggaatacttcatttctgcgcgcggcgcg
cgtaaaggtctggcagataccgcgctgcgtactgcggactccggttacctgacccgccgc
ctggtagacgtttcccaggacgtgatcatccgtgaggaggactgcggcgcggccaagggc
atctgggtagaggatattaaggaaggcaatcaggtcatcgagccgctgcgcgagcgtctg
ctcggccggtatccggtcgacgatatctgcgatccggcaacaggcgcgttgatcgtaccc
aagagcaagatgatgaacgatgcggacgcggacgcgatcatcgcggccggtatcacccgc
gtacagatccgctcggtcctcgaatgccgcgcgcgcaagggtgtctgctcgcactgctat
ggcatgaatctggcgatgggtacgccggtcggcaagggcgaggcggtcggcatcatcgcc
gcgcagtccatcggcgagccgggtacccagctcaccatgcgtacgttccacaccggcggc
gttgccggctcggatatcacgcagggtcttccgcgtgttgaagagctgttcgaggcacgc
aagcccaagaaggccgcaacccttgcggagatcagcggcgtcatcaccattgaggagtcc
aagcgcaccacggtcaagacagtcaacatcgtcaattcggaaacaggcgatatgcgttct
taccagctcgcgtcgtcttccggcatccgtgtgaccgatgggcaggaggtcgagcagggc
ttccagctcaacgaaggttcgctcaacccgcatgatatcctgcgcatcctcgatccgcgt
gcagtgcatgactatgagatcaaggaagtgcagaaggtttaccgccagcagggcgttgat
atcaacgacaagcatatcgaagtcatcgtgcgtcagatgatgcgcaaggtgcgcgtcgag
gacgcgggcgacgcagaggtgctgcccggctcggtaatggatctgcttgagtttgaggac
tataaccagaaggtgcaggaccgtatcgacgcgggcgaggagggtctccgcctggcggtg
gccgagccgacgctcatgggtattaccaaggcgtcgctggcgaccgactcctggatgtcc
gccgcgtcgttccaggaaacaacccgcgtgctgaccgacgccgcgatcaagggtaaggta
gacccgctgatgggcctgaaagaaaacgtcatcatcggcaagctgattccggcaggctcc
ggcatgaccgaatactgcgacggacattacgagcagacggtcgatctcggctga
DBGET
integrated database retrieval system
