Intestinibacillus sp. NTUH-41-i26: RX717_10375
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Entry
RX717_10375 CDS
T09461
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
int
Intestinibacillus sp. NTUH-41-i26
Pathway
int02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
int00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RX717_10375 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
int03021
]
RX717_10375 (rpoD)
Transcription machinery [BR:
int03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RX717_10375 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
LexA_DNA_bind
HTH_24
Phage_TAC_12
SWAP1_C
Motif
Other DBs
NCBI-ProteinID:
WOC76913
LinkDB
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Position
complement(2017679..2018902)
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AA seq
407 aa
AA seq
DB search
MGNGNAPEQAVDQQQVVKDLLALGKKNGRLTLKEIADALGQLDMESDDIDKLYETLESMG
IEIETEGVLEKALGDDDDEVFEPEDVEEVPEEELVDTSAMAEAFAIDDPVRMYLKEIGKV
DLLSPEEEITLAEQMQRGNEAIERVRNEGDAIPPEERAGLDKDIKAGERAKKRLAEANLR
LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDSTKGFKFSTYATWWIRQAITRAIAD
QARTIRIPVHMVETINKVIRVSRQLLQELGHDPSPEEIAKEMNMPVDRVRDILKIAQEPV
SLETPIGEEEDSHLGDFIPDDDAPEPAEAASFMLLKEQLVEVLKTLTPREEKVLRLRFGI
EDGHTRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFLN
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatggcaatgcgccggagcaggcggtggaccagcagcaggtggtgaaggacctg
ctggcgctcggcaaaaagaacgggaggctgacgctcaaggagattgcggacgcgctcggc
cagttggatatggaaagcgacgacatcgataagctgtatgaaacgctggagtcgatgggg
atcgagatcgagaccgagggcgtgcttgaaaaggcgctgggcgacgatgatgacgaggtg
ttcgagcctgaggacgtcgaggaggtgccggaggaagagctggttgatacctcggcaatg
gcggaagcctttgcgattgacgatccggtgcgcatgtacctgaaggagatcggtaaggtc
gacctgctcagccctgaggaggagatcacgctcgccgaacagatgcagaggggcaatgag
gcgatcgagcgcgtccgcaatgagggggacgcgatcccaccggaggagcgcgccggactg
gataaggacatcaaggccggcgaacgggcgaaaaagcgtttggccgaagcaaatctccgt
ctggtcgtttcgatcgcaaagcgctatgtcggccgcgggatgctgtttttggatttgatc
caggagggcaacttgggcctgatcaaggcagtggaaaagtttgattcgaccaagggcttc
aaattttccacctatgcaacctggtggatccggcaggccatcacccgcgcgatcgcggat
caggcgcggacgatccgcattccggtacacatggtagagacgattaacaaggtcatccgt
gtttcccgccagctcctacaggagctgggacacgacccgagtccggaggaaattgccaag
gaaatgaatatgccggtcgatcgtgtgcgcgatatcctcaagattgcgcaggagccggtt
tcgctggaaacgccgatcggcgaggaggaggactctcatctgggcgatttcattccggat
gatgacgcgcccgaaccggctgaggcggcttcattcatgctgctcaaggagcagctggtc
gaggtactcaaaaccctgaccccgcgcgaggaaaaggtgctgcggctgcggttcggcatc
gaggacggtcatacccgcacgctcgaggaggtcggcaaggagttcaacgtcacccgtgag
cgtatccgccagatcgaggccaaggcgctgcgcaagctgcgccatccgtcgcgttccaaa
aagctgaaagacttcctgaactga
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