Iodobacter ciconiae: EJO50_00445
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Entry
EJO50_00445 CDS
T05767
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
iod
Iodobacter ciconiae
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
iod03009
]
EJO50_00445 (rlmD)
Enzymes [BR:
iod01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EJO50_00445 (rlmD)
Ribosome biogenesis [BR:
iod03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EJO50_00445 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
N6_N4_Mtase
Methyltransf_32
TRM5-TYW2_MTfase
MTS
Methyltransf_23
Methyltransf_11
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
AZN35088
UniProt:
A0A3S8ZNH5
LinkDB
All DBs
Position
complement(104552..105856)
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AA seq
434 aa
AA seq
DB search
MNAPALIESLDFEGHGIARVDGKTIFIDGALPRETVSYKSYRIKPRFENAEATQIHTTSH
MRVNPPCPHFGVCGGCSMQHLEFTGQVAAKQRVLEDNLKRIGNVSAEMMLPAIYGPEWGY
RQRARLSVSYDAKQNEVRLGFFERRSKVIAALNECRVLPPHISKQILPLRSLLKSLSIKD
RILHIELAVGEHVDILVLRTPVAPNKADQALIKKYAEQWKVQFWLQAKSVEAATPFYPLD
APQLSYSIPEFGIVMRYKPTEFTQVNHHINRTLVARAMDLLKPQAGDVIADFFCGVGNFT
LAVAKSGAKTLGMEGLQQLVDRANESASDNHLTGNTSFKVANLFEMTESWLKKLGHFDKM
LIDPPRDGAHELCKSISAQNGPKRIVYVSCNPSTLARDADVLVHEKGYTLKAAGIVNMFP
HTAHVESIAWFEKH
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctcctgccctgattgaatccttagactttgaaggccacggcattgctcgcgta
gatgggaaaacgatttttattgatggcgctctgccacgcgaaaccgtcagctataaaagc
tatcgcattaagccgcgttttgaaaacgccgaagccacgcaaatccataccaccagccat
atgcgcgttaacccgccctgtccgcactttggtgtgtgcggcggttgcagcatgcagcat
ctggaattcactggccaggtggcggccaagcagcgggtactggaagacaacttaaaacgc
atcggcaatgtatccgccgagatgatgttgccagcgatttacggaccggaatggggctat
cgccagcgggcgcgtttatcggtttcgtatgatgccaagcaaaatgaagtcaggctgggc
ttttttgagcggcgctctaaagtgattgcggcgctgaatgaatgccgtgtattgccgccg
catatttccaagcaaatcttgccactgcgctcgctgcttaaaagcttatcgataaaagat
cgcatcctgcatatcgagctggccgtcggggagcatgtggatattctggtgctgcgcaca
cccgtcgcccctaataaagccgatcaggccttgattaaaaaatacgctgagcagtggaaa
gtacagttctggctgcaggcaaaatcggttgaagcggccacaccgttttacccgctggat
gcgccgcagctgagctacagcattcctgaatttggcattgtgatgcgttataagcccaca
gaattcacccaggtaaaccaccacatcaaccgcacactggtggcgcgggctatggattta
cttaaaccgcaggccggtgacgtgattgccgactttttctgtggcgtgggtaatttcacc
ttggccgttgctaaaagcggcgctaaaacactgggcatggaaggcttgcaacagctggta
gacagggccaatgaaagcgccagcgataaccacctgactggtaataccagctttaaagtg
gccaatctatttgaaatgactgaaagctggctgaaaaagcttggccatttcgacaagatg
ctgatcgatccgccaagggacggcgcgcacgagctgtgcaaatccatcagcgcccaaaac
ggcccgaagcgcatcgtttacgtatcctgtaatccctccaccctcgcccgcgatgccgat
gtgctggtgcacgaaaaaggctacacgctaaaagctgccgggatagtgaatatgttcccg
catacggcgcatgttgagagtattgcgtggtttgagaaacattga
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