Iodobacter ciconiae: EJO50_00650
Help
Entry
EJO50_00650 CDS
T05767
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
iod
Iodobacter ciconiae
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
iod03016
]
EJO50_00650
Enzymes [BR:
iod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EJO50_00650
Transfer RNA biogenesis [BR:
iod03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EJO50_00650
Prokaryotic type
tRNA splicing ligases
EJO50_00650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AZN35122
UniProt:
A0A3S8ZP06
LinkDB
All DBs
Position
152401..153621
Genome browser
AA seq
406 aa
AA seq
DB search
MSNYSQINVENASPIKLWTKGVPLEYEAREQLINTARMPFIFEHLAVMPDVHLGKGSTIG
SVIPTRGAIIPAAVGVDIGCGMMAARTTLMAGDLPDSLAGLRSAIEAAVPHGRTSTRSGR
DKGSWDTPPATVDAMWGELADGFKQITDKYPRLIKTNNRKHLGTLGTGNHFIEVCLDEEN
RVWFMLHSGSRGVGNAIGTHFIELAQADMRQHIANLPHRDLAYFEEGSQHFDDYVEAVGW
AQDFARRNRAVMMQNVIAAARKVISKPFLADVEAVNCHHNYVQKETHFGAEVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRIMSRTKAKKLFTVEDQINATA
HVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEIVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaattacagccagattaatgtggaaaacgcttcgccaatcaagctctggaccaag
ggcgtgccgctggaatatgaggcgcgcgagcagctgattaacactgccagaatgccgttt
atttttgagcatctggccgtgatgcccgatgtgcatctgggtaagggatcgaccatcggc
agcgtgattccaacccgcggggcgattattcctgctgcggtgggggtggatattggttgc
ggaatgatggccgccagaaccacgctgatggcgggagatttgcccgatagtctggccggg
ttgcgcagtgcgattgaggccgcagtgccgcatggccgcacttcaaccagaagcggtcgg
gataaaggatcttgggatactccacctgccacggtggatgccatgtggggtgagctggct
gatgggtttaagcagattaccgataaatatccccgcttaattaaaaccaataatcgtaag
catctgggaacactgggtacaggaaaccactttatcgaggtatgccttgatgaggaaaac
cgcgtgtggtttatgttgcactccgggtcgcgtggggtaggaaatgcgattggtacgcac
tttatcgagctggctcaggccgatatgcgccagcatattgccaacttgccgcaccgtgat
ctggcttattttgaggaaggcagccagcactttgatgattatgtggaagccgtgggctgg
gcgcaggattttgcccgccgtaatcgtgcggtgatgatgcaaaacgtgattgcagccgcg
cgaaaagtaatcagcaagccctttctggctgatgtagaggcggtgaattgccaccataac
tatgtgcaaaaagaaacgcactttggtgccgaggtgctggtgacgcgcaaaggggcggtt
tcggcgcaaaaaggccagctggggattattccggggtcgatgggggccaaaagctttatt
gtccgtggccttggaaatgaagaggctttttgctcctgcagccacggtgccgggcgaatt
atgagcagaaccaaggccaaaaaactctttacggtggaagaccagatcaacgccactgcg
catgtggaatgccgcaaagatgcagaggtgattgatgagattcccatggcttacaaagat
atcgacgcagtgatggccgcgcagtccgatctggtagaaattgtgcataccctgcgccag
gtggtttgtgtgaaggggtaa
DBGET
integrated database retrieval system
