Iodobacter ciconiae: EJO50_00885
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Entry
EJO50_00885 CDS
T05767
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
iod
Iodobacter ciconiae
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iod03400
]
EJO50_00885 (sbcC)
DNA repair and recombination proteins [BR:
iod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EJO50_00885 (sbcC)
Archaeal homologous recombinant proteins
EJO50_00885 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
SMC_N
AAA_29
nSTAND3
ABC_tran
cobW
AAA_22
nSTAND_NTPase5
AAA_21
CEP76_N
AAA_15
TsaE
NTPase_1
AAA_14
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AZN35165
UniProt:
A0A3S8ZNW2
LinkDB
All DBs
Position
complement(196595..199990)
Genome browser
AA seq
1131 aa
AA seq
DB search
MKLLSLRLKNLNSLKGEWKIDFTAAPFKDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
MSSISASSNELMTRHTSDCLAEVEFEVKGSRYRAFWSQRRARNLASGALQAPRVELADAN
GQILSDKINEKLKFTEALTGLDFGRFTKSMLLAQGGFAAFLNAPANERAELLEELTGTDI
YGQISQSVFEQTRGSKQALDQLRAKASGVELLSEEQLSGLHKEACDLAHSRQALQSQLSQ
VQINRQWREALSKANSQHADAQSRQQEALAALASAEPQLDQLARSEPAAKLQLPYSALSQ
ATEALAHTGQELVQLSAEQNNALEEHRARLWQAQQLAMQQNQQSRAQLSQTKAAQSILIS
TQRPEHAKLGEQLAGWRVQFLSLNTLSGEMSRLEAEINQQNIHALIEQQAASILSASNQQ
AESQAAGLAENTAQAAWQALLAGKDEAAFWEQKQSLLARGADIARLAELEISSQKTQQQS
ALLATTLAEKQTMVSQKEQVLATLRLTFSDLKQQLNDKKKLLEQEQRIQGLEAYRQQLRA
GEACPLCGSLEHPAIHDYEVLNVSATAAAMEAKQAELEKLTEEGQALKLDLTRLEAEIGA
LESQQQNNAALSSEQLQQWHLLCSKLATPAPDLAALSQQHAAAVQDADATLNQLAQNKAQ
QEEAQKIRLAAEKALAECQQALQLLTQKLENAQAHLQDLNLRKSRLAEQISTETDALRSS
LPDQKLPADSNAWLQAQESQWQGWQAAQQQLQQLAQDLIVQQQAANTAEEAENTWLLRWQ
KTGAAPQAPLPGTQQPAADLATCVLQINSLQEQINQQKGREINLQKRRQEHEEQLQHASR
AWQAALAASPFQDEAAFIAAHLEDDQRNALSALKQQLDTALISANTLVSSAEQSLEPLLA
TPKTELALPELDEQLASLSAEISRQAQRQGEIRGALQGDDARRSGQAALFTEIAAMSVDY
DYWQHLNSLIGSADGAKYRKFAQGLTLDHLIHLANRQLERLHGRYQLLRKGELELGIIDT
WQGDVARDTKTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDGETLEIALD
ALDHLNASGKMIGIISHVEALKERIPVQLKIHKSAGLGLSQMDKQYAFSGG
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcttagcctgcgtttaaaaaacctgaattctttaaaaggcgagtggaagatc
gactttaccgccgcgccctttaaagacaacggcctgtttgccattaccggccccactggc
gcaggtaaaaccaccctgctcgatgccatctgcctggcgctttaccaccaaaccccgcgc
atgagcagcatttcggctagcagcaatgagctgatgacccgccacaccagcgattgcctt
gcagaagtagaatttgaagtgaaaggcagccgctaccgcgctttctggagccagcgccgt
gcgcgtaatctggccagcggcgcattgcaagcgccaagagtggagctggcagacgccaac
gggcaaattctcagcgataaaatcaatgaaaaactcaaatttaccgaagccctgaccggc
cttgattttggccgctttaccaaatcgatgttgctggcgcagggcggctttgcggccttt
ttaaatgcccccgccaacgagcgcgccgagcttttagaagagctcaccggcaccgatatt
tacggccagatttcgcaatctgtatttgagcaaacccgcggcagcaagcaagcgctcgat
cagctgcgcgccaaggcttcgggagtcgagctactgagcgaagagcagctcagcggctta
cacaaagaagcctgtgacttagcccatagcaggcaagcgctgcaaagccagctcagccag
gtgcaaattaatcgccagtggcgtgaagcactgagtaaagccaatagccagcatgctgac
gctcaatcccgccagcaagaagcccttgctgcactggccagcgcagagccgcaactggat
cagcttgcccgaagcgagccagcggccaaactacaattgccgtacagcgcattaagccag
gccacagaggcactcgcccataccgggcaagagctggtgcaactgagcgcagagcaaaac
aacgcccttgaagaacaccgggccaggctctggcaggcgcagcaactggcgatgcaacaa
aaccagcaaagccgcgcccagcttagccagaccaaggccgcgcagagtatattaatcagc
acccagcgccccgagcacgcaaaactgggcgagcaactggcaggctggcgggtgcaattt
ttaagcttaaatacgctatcaggcgagatgagcaggctggaagcagagatcaatcagcaa
aatatccatgcactgattgagcaacaagcggcaagcattttaagcgccagtaatcagcaa
gcagaaagccaggcggctgggctggcagaaaacaccgcgcaagcagcatggcaggctttg
cttgcaggcaaagacgaagcggctttttgggagcagaaacaaagcttacttgcgcgtggc
gcagatatcgcgcggctggccgagctggaaatcagcagccaaaaaacacagcagcaatct
gcactgctggccaccacgctggccgaaaaacagaccatggtcagccagaaagagcaggtg
ctggcaacgctcaggctgacattcagcgatttaaaacaacagctgaacgataagaaaaaa
ctgctggaacaagaacaacgcattcaagggctggaagcctaccgccagcaattgcgagcc
ggtgaagcctgcccgctctgtggctctcttgagcatccggccattcatgattacgaggtg
ctgaatgtttctgccaccgcagcagcaatggaggccaaacaggcagagctggaaaagctt
actgaagaggggcaggcgctcaagcttgatctcaccaggctggaagcagaaatcggcgcg
ctggaatctcagcagcaaaataacgcagctcttagctctgagcagctgcagcaatggcat
ctgctctgcagcaagctggcgactcccgcacctgatttagccgcactcagccagcaacac
gccgcagcagtgcaggatgcagacgccactttaaaccagctggcccaaaataaagcgcag
caggaagaagcgcaaaaaataaggctggccgctgaaaaagcactggctgaatgccagcaa
gctttgcaactgctgacgcaaaagctggaaaacgcacaggcccatctgcaggatttaaac
ctgagaaaaagcaggctggccgagcaaataagcacagaaaccgatgcattgcgaagctct
ctacccgatcaaaagcttcctgctgacagcaacgcctggctgcaggcgcaagaatcccag
tggcaaggctggcaggccgctcagcaacaattgcaacagctggcacaagatttaattgtt
cagcagcaagccgccaacactgccgaagaggcagaaaacacctggctgctacgctggcag
aaaacaggtgcagcaccgcaagcgcccctgcccggcacccaacaaccggcagctgattta
gccacgtgcgtcttgcagatcaacagcctgcaagagcagattaatcagcaaaaaggtcgg
gaaatcaacctgcaaaagcgcaggcaagagcatgaggagcagctgcagcacgccagccgt
gcatggcaggccgcgctggccgccagcccgtttcaagacgaagccgcctttatcgcagcg
catttggaagacgatcagcgcaatgcattaagcgcgctcaaacagcagctcgataccgcg
ctgatcagcgccaacaccctagtcagcagcgcggaacagagcttagagccactgcttgcc
acgcccaaaacagagctagccttgcccgagctggatgagcagctggccagcctcagcgca
gaaatcagccggcaggcccagcgccagggcgaaattcgcggggcattgcaaggagacgat
gcaaggcgcagcggccaggccgcgctgtttaccgagattgcggccatgagcgtggattac
gactactggcagcatctcaacagcctgattggctcggccgatggtgcaaaatatcgtaaa
tttgcacagggcttaacgctggatcatctgattcatctggcaaatcgtcagctagagcgc
ctgcacggccgctaccagctgctgcgcaaaggcgagctggagctggggattatcgacaca
tggcaaggcgatgtggcacgggacaccaaaacattatcgggcggtgaaagctttttagtc
agcctggcgctggcccttgcgctgtctgatctggtcagccacaagacatcgattgattcg
ctgtttttagacgaaggttttggcacgctggacggtgaaacactggaaatcgccctcgac
gcgctcgatcacctcaatgccagcggcaaaatgataggcatcatcagccacgtagaagcc
ctgaaagaacgcatccccgtacagctgaaaatccataaatcagcagggctggggctcagc
cagatggataagcagtatgcgttttcaggagggtaa
DBGET
integrated database retrieval system
