Iodobacter ciconiae: EJO50_05645
Help
Entry
EJO50_05645 CDS
T05767
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
iod
Iodobacter ciconiae
Pathway
iod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJO50_05645 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iod03019
]
EJO50_05645 (pnp)
03016 Transfer RNA biogenesis [BR:
iod03016
]
EJO50_05645 (pnp)
Enzymes [BR:
iod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EJO50_05645 (pnp)
Messenger RNA biogenesis [BR:
iod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EJO50_05645 (pnp)
Transfer RNA biogenesis [BR:
iod03016
]
Prokaryotic type
tRNA degradation factors
EJO50_05645 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AZN36008
UniProt:
A0A3S8ZRA5
LinkDB
All DBs
Position
1282046..1284193
Genome browser
AA seq
715 aa
AA seq
DB search
MFNKIVKSFQYGKHNVTMEIGEIARQASGAVLINMDDTVVLVTVVAARDVKPGQDFFPLT
VDYQERTYAAGRIPGGFFKREGRPSEKEILTCRLIDRPIRPLFPEGFYNDIQIIATVMSV
NPEVDPDIVAMLGASAALSISGVPFDGPIGAARVAYINGEYVLCPTLSELKTSQMDLVVA
GTSQAVLMVESEADELSESIMLGAVVFGHEQMQVAINAINELADEANPELFVWDEPVANE
ALIAQVRAVAAAGLSEAFKLRQKQLRTIKINETWALVKAALITDETGTLAANEIKGIFKG
LEAEIVRGQILDGYPRIDGRDTRTVRPITIRSGVLPRTHGSVLFTRGETQAIAVATLGTK
LDEQKIDALAGAYTDRFMLHYNFPPYSTGETGRVGTPKRREIGHGRLAKRALAAMLPSVE
DFGYSMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNRFAVLS
DILGDEDHLGDMDFKVAGTENGITALQMDIKINGITKEIMKVALDQAQEGRVHILAIMKG
TMEGARTEVSEHAPRLYTMKINPEKIRDVIGKGGSVIRALTEETGTQIDIQEDGTITIAS
VSAEGADEAKRRIADITAEVEIGKIYEGPVVKILDNNVGAIVSIMPGKDGLVHISQIANE
RIKNVGDYLKEGQVVRVKVIEQDERGRIRLSIKAVSNEETPAAEVVAAAPVEVAE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaataaaattgtgaaatcattccagtacggtaagcataatgtcaccatggaaatt
ggtgaaattgcccgtcaggctagtggcgccgttctgattaatatggacgataccgttgtt
ctcgtgacggttgtggccgcacgtgatgttaagccgggccaggatttcttcccgctgacc
gttgattaccaagagcgtacttatgctgctggtcgcatccccggtggtttctttaagcgt
gaaggccgtccttccgaaaaagaaattttaacttgtcgtctgattgatcgtccgattcgt
cccctgtttcctgaaggtttttacaacgatatccagattattgcgactgtgatgtcggtt
aatcctgaagttgatccagatatcgttgcgatgctgggtgcttctgctgctctgtcgatc
tctggtgtgccctttgatggcccgatcggcgctgcgcgcgtggcttacattaatggtgaa
tatgtactttgcccaacattgtctgagctgaaaactagccagatggatctggtggttgca
ggtacttcacaagctgtattgatggttgaatctgaagcggacgaattgtccgaatccatc
atgctgggtgccgttgtatttggtcacgagcaaatgcaagtggcgatcaatgcaatcaat
gaactggctgatgaagctaaccctgaattgtttgtatgggatgagccggttgcaaatgaa
gcgctgattgcacaggttcgcgctgttgctgctgcaggcctgtcagaagcatttaaattg
cgccaaaagcaattacgtaccatcaaaatcaatgaaacctgggctttggttaaggcggcc
ttgattactgacgaaaccggcactttggctgctaacgaaatcaagggcattttcaaaggc
ctggaagctgagatcgttcgtggtcagattctggatggctacccgcgtattgacggtcgt
gatacacgcactgtgcgccctattacgattcgttcgggtgtattgccgcgtacgcacggc
tcggtactgtttactcgtggtgaaactcaagcgattgcagttgctaccctgggtactaaa
ctggacgagcaaaaaattgatgcattggcaggtgcttacaccgatcgctttatgctgcat
tacaatttccctccgtattcgaccggtgaaacaggtcgcgtaggtacgccaaagcgtcgt
gaaattggtcacggtcgtctggctaagcgtgcactggctgcgatgctgccatctgttgaa
gactttggctactcgatgcgcgttgtttcggaaattaccgaatcaaacggctccagctcg
atggcttcggtttgtggtggttgtctggcgctgatggatgcgggcgtgccgatgaaaaac
cacgtggccggtattgccatgggtctgatcaaagaaggcaatcgttttgcagtattgtcc
gatatcctgggtgatgaagatcatttgggtgatatggactttaaagttgcgggtactgaa
aacggtatcactgcactgcaaatggacatcaaaatcaacggtatcactaaagagatcatg
aaagtggctctggatcaggcgcaagaaggccgtgtgcatatccttgccatcatgaaaggt
acaatggaaggcgcgcgcactgaagtgagcgagcatgctccacgcctgtatacgatgaaa
atcaatccggaaaaaatccgtgatgtgatcggcaagggtggttcggtgattcgtgccctg
actgaagaaacgggcactcagattgatatccaggaagatggcacgatcaccatcgcttca
gtctctgctgaaggcgcggatgaagctaaacgccgcatcgctgatatcacggctgaagtt
gaaatcggcaagatctacgaaggtccggttgttaagattctggacaacaacgtaggcgcg
attgtgtcgatcatgccgggcaaagatggtctggttcacattagtcagattgctaacgag
cgcattaaaaacgtgggcgattacttgaaagaaggccaggttgtgcgcgttaaagtgatc
gagcaagacgagcgtggccgtattcgtttgtctatcaaggcggtaagtaatgaagagacg
cctgctgcagaggttgttgcagctgctccggttgaagtcgcagagtaa
DBGET
integrated database retrieval system
