Iodobacter ciconiae: EJO50_09825
Help
Entry
EJO50_09825 CDS
T05767
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
iod
Iodobacter ciconiae
Pathway
iod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJO50_09825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iod03019
]
EJO50_09825
Enzymes [BR:
iod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJO50_09825
Messenger RNA biogenesis [BR:
iod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJO50_09825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
AAA_22
ERCC3_RAD25_C
P-loop_SecA
UvrD-helicase
Peptidase_S78_2
Motif
Other DBs
NCBI-ProteinID:
AZN36760
UniProt:
A0A3S8ZTC4
LinkDB
All DBs
Position
2252153..2253526
Genome browser
AA seq
457 aa
AA seq
DB search
MTFASLGLAPEVLKAVAEQGYEHPTLIQAQAIPVILQGRDVLGAAQTGTGKTAAFTLPIL
TKIAKHANTSASPARHPIRVLILTPTRELADQVSESVTTYSKYMPLRSHVVFGGMDIKAQ
IPKLREGVEILVATPGRLLDHIQQKSVNLSQVEILILDEADRMLDMGFILDIRKIFELCT
TRKQTLLFSATFAPEIKKLAEDFMHEPEVIEVARQNSANESVKQELHPVENSRKKALVAH
LIRTHNMGQVIVFCRTKIGAEQLGRELKRAGFSAEAIHGDRTQQSRLETLAAFKDGTLKV
LVATDVAARGLDINELPFVINFELPTNPEDYVHRIGRTGRAGASGIAISLVAPEEEKAYL
GIQKMLKRDLPLIPVIGFSPGTTPLETAPQSGRGRDRSAARSSAVPVAALTRNMNTPPSS
RARSQSYDEMPDAPLSKLKRAPQIAALFLPPKYQVTQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgcatcgctcgggctggctccggaagtgctcaaggcagtcgccgagcaaggt
tatgaacatccgacgctgattcaagcgcaggccatccctgtcatattgcaaggccgcgac
gtgctcggtgcagcacaaacgggcaccggtaaaacagctgcatttactttaccgatactt
accaaaatcgctaaacacgcgaacaccagcgcgtctcctgcccgccacccgattcgcgta
ttaattcttacgccaacccgcgagctggccgatcaggtttccgaaagtgttaccacctat
agcaaatacatgccgctacgcagccacgtggtatttgggggcatggatattaaggcgcaa
atccccaagctgcgcgaaggtgttgaaatccttgtcgcaacgccagggcgtctgcttgat
catattcagcaaaaatcggttaatttatcccaggttgaaatcctgattctggatgaagcc
gatcgcatgctcgatatgggttttattctggatattcgcaagatttttgagctgtgtact
acgcgcaagcaaacgctgctgttttcggcgacttttgcaccagaaatcaaaaaactggcc
gaagactttatgcatgagccggaagtcatcgaagtggcgcgccagaattcagccaatgaa
tcagtaaaacaagagctgcatccagtcgaaaacagccgcaaaaaagccctcgttgcccat
ctgatccgcacccacaatatggggcaagtgattgtcttttgccgcaccaaaattggtgca
gagcaattgggccgcgagctaaaacgcgcgggcttttctgccgaagccattcatggtgac
cgcacccagcaatcccgcctggaaacgctggcagcatttaaagacggcacgctaaaggta
ttggtagccaccgatgtagccgcacgtggcctggatattaacgagctgccctttgtaatt
aacttcgagctgccaaccaatccggaagactatgtgcaccgcattggccgcactggtcgc
gctggcgcgtccgggattgctatttctctggtagcaccagaagaagagaaagcttacctt
ggcattcaaaaaatgctcaaacgtgatctgcctctgattccggtgattggcttctcgcca
ggcactacaccgctcgaaaccgcacctcagtcagggcgcggacgggaccgctctgctgcg
cgctcttcagccgtaccggttgccgccctgacccgcaatatgaatacgccgccaagcagc
cgtgcccgctcacaaagctacgatgagatgccggatgcgccgctgtccaaactaaagcgt
gcgccacaaattgccgccttatttttaccgccaaaatatcaagtaacgcaataa
DBGET
integrated database retrieval system
