Iodobacter ciconiae: EJO50_11445
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Entry
EJO50_11445 CDS
T05767
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
iod
Iodobacter ciconiae
Pathway
iod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EJO50_11445 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iod03021
]
EJO50_11445 (rpoC)
03400 DNA repair and recombination proteins [BR:
iod03400
]
EJO50_11445 (rpoC)
Enzymes [BR:
iod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EJO50_11445 (rpoC)
Transcription machinery [BR:
iod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EJO50_11445 (rpoC)
DNA repair and recombination proteins [BR:
iod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EJO50_11445 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
OPA1_C
Motif
Other DBs
NCBI-ProteinID:
AZN37045
UniProt:
A0A3S8ZUC6
LinkDB
All DBs
Position
complement(2627051..2631250)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKGLLELFKQVAANEEFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRDRMGHIELASPVAHIWFLKSL
PSRLGMVLDIPLRDIERVLYFEGFVVIEPGMTPLTRGQLLTEEDYFNKVEEYGDEFVALM
GAEAVRELLKSMDVEDQITTLRAELSSTGSETKIKKISKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKLMGLELFKPFIFHKLEVLGLATTIKAAKKMVEAQDPVVWDILEDVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRERINAKGEGMNLIDVSEAMRAYASK
EVTLQTRVDIRLKEWVKDEDGEWQAQMVRRSTTVGRAILSEILPKGLDFSHIDKALKKKE
IGKLINASFRRCGLKDTVIFADQLMYTGFAYSTRGGISICVDDMVVPDKKVQLLAESYAE
VREIEHQYSSGLVTQGERYNKVVDIWGRAGDQIAKAMMDQLGKEKVVNREGKEVDQDSFN
SVFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTKNGVVMKAVVQGGDVIEALRDRIL
GRVVVLDVIDPVTHETVFPVGTLLGEDEVDEIEHLGIDEVKVRTPLSCETRYGLCAKCYG
RDLGRGHLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAATQVEAKSSGNIAY
SPNMRYVTNAKGDPVVIARSAEVIVVDDNGRERERHKVPYGATLTVKDGDSIKAGGVLGT
WDPHTRPIISEYAGQVKFDNVEEGITVMKQVDDVTGLSTLVVIDPKRKGGKATGVRPMVK
LLDERGGEVKMAGTDTTVMIGFQVGCIITVKDGQVVGVGDVLARIPQESAKTRDITGGLP
RVAELFEARIPKDPGMLAEITGTVSFGKETKGKQRLVLTDLEGAPHEYLILKEKHVLVHD
GQVVNRGESIVDGAIDPHDILRLQGIEALSRYVVQEVQEVYRLQGVKINDKHIEVILRQM
LRRVVITDSADSAFIQGEQVERAEVLTVNDKLIAEGKLPASYDNVLLGITKASLSTDSFI
SAASFQETTRVLTEAAIMGKIDDLRGLKENVIVGRLIPAGTGLAYHRSRKRQAPVVDQLS
DIFAPTAEAETAVSGEVGA
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcttactcgaactcttcaagcaagttgctgcaaatgaagaatttgatgcgatt
aagatcggtctggcatcgccagaaaaaatccgctcttggtcgttcggcgaagtaaaaaag
ccggaaaccattaactaccgtacatttaagccagaacgtgatggcttattttgcgcgcgt
atttttggcccaatcaaagattacgaatgcctgtgcggtaagtacaaacgcctgaagcac
cgtggtgtgatctgcgagaagtgcggtgtggaagtgaccctgtctaaggttcgtcgcgac
cgcatggggcacatcgagctagctagcccggttgcacacatctggttcttgaaatccctg
ccatcgcgcctgggtatggtgcttgatatcccattgcgtgatatcgaacgcgtactttac
ttcgaaggttttgtggtcatcgagccaggcatgacgccactgacccgtggccaattgctg
actgaagaagattacttcaacaaagttgaagagtacggtgacgaattcgtagccctgatg
ggcgcggaagcggtgcgtgaactcttgaagagcatggatgtagaagaccagatcaccacc
ttgcgtgctgaattgtcctccaccggctctgaaaccaaaatcaagaagatttccaagcgc
ctgaaagtgctggaggccttccaacgttctggcatcaagccagaatggatggttctggaa
gttctgcctgtattgccgccagaattacgtcctctcgtaccattggatggtggtcgtttc
gctacttcagatctgaatgatctgtatcgccgtgtgattaaccgtaataaccgtctgaag
cgtcttttagaattgcgcgcgcctgaaattatcgtgcgtaatgaaaaacgtatgttgcaa
gaagcggttgattccttgctcgataacggccgtcgcggtaaagcgatgaccggtgcgaac
aagcgtcctctgaaatccctggccgatatgatcaagggtaagggcggtcgtttccgtcag
aacttactgggtaagcgcgtagattattctggccgttcggtgattaccgttggcccgaca
ctgcgtctgcaccagtgcggcttgccaaaactgatgggtctggagctgttcaaaccattt
attttccataagcttgaagtgcttggtcttgcgaccaccattaaagcggccaagaaaatg
gttgaagcccaggatccggtggtttgggacatcctggaagacgtgattcgcgagcacccg
attcttctgaaccgtgcgccaacactgcaccgcctgggtattcaagcgtttgagcctgtg
ttgatcgaaggtaaagcgattcaactgcacccactcgtttgcgcggcattcaatgccgac
ttcgacggtgaccagatggctgttcacgttccgctgagccttgaggcgcaaatggaagca
cgcacgctgatgctggcttctaacaacgtattgtcgccagcaaacggtgagccaattatc
gttccttctcaggatatcgtgctgggtctgtactacatgactcgtgagcgtatcaatgcc
aagggcgagggcatgaacctgatcgacgtaagcgaagcaatgcgcgcttacgcgagcaag
gaagtgaccttgcaaacgcgtgttgatatccgtttgaaagaatgggtaaaagacgaagac
ggcgaatggcaggctcagatggtgcgtcgcagcactacggttggccgtgcgattctgtct
gaaatcctgcctaagggcctcgatttcagccatatcgacaaagcgctgaaaaagaaagaa
attggtaagctgattaacgcttcattccgccgctgcggtctgaaagataccgttattttt
gctgaccagctgatgtacaccggttttgcttattcgacacgcggcggtatctcgatttgt
gttgacgatatggttgtgccggataagaaggttcagctcctggctgaatcctacgctgaa
gtgcgcgagatcgagcatcagtacagctcgggtctggtgactcagggtgaacgttacaac
aaggttgtggatatctggggccgtgccggtgatcagattgccaaggcaatgatggatcag
ctcggtaaagagaaggtcgtcaatcgcgaaggcaaagaagttgatcaggactcgtttaac
tcggtatttatgatggccgattccggtgcccgcggttctgcagcgcagattcgccagctg
gccggtatgcgtggtctgatggctaaaccggacggttcgattattgaaacgccgattacc
accaacttccgtgaaggcctgaccgttcttcagtactttatctcgactcacggtgcacgt
aaggggctggcagatacggcgcttaaaacagcgaattccggttacctgacacgtcgtctg
gttgacgtcacacaagacctggttgtgatcgaagacgattgcggtaccaagaacggtgtg
gtcatgaaggcggttgtacagggtggtgatgtgattgaagccctgcgtgaccgtattctg
ggccgtgttgttgtgcttgatgtgatcgatcctgttacgcatgaaacagtgttcccagtg
gggacattactgggcgaagatgaagtagacgaaatcgaacaccttggtattgatgaagtt
aaggttcgcacgccactctcatgcgaaactcgctacggtctgtgtgctaagtgttatggc
cgtgacttgggtcgtggtcacttggtgaataccggtgaagctgttggtgttattgccgct
cagtcgatcggcgagccgggtacccagctgactatgcgtacgttccacatcgggggtgcg
gcttctcgtgctgctgctgcaacgcaagttgaagctaagtccagcggtaatatcgcgtac
agccctaatatgcgttatgtgaccaatgccaagggcgatccggttgtgattgcacgctct
gctgaagtgattgttgtcgacgacaatggtcgcgagcgcgagcgtcacaaagtgccatac
ggtgcaacgctgactgttaaagacggcgatagcatcaaggccggtggcgtgctgggaacg
tgggacccgcatactcgtccaattatttcggaatacgccggtcaggtgaaattcgataat
gtggaagagggtattaccgtaatgaagcaggtcgatgatgtgaccggtctttcgaccttg
gttgttatcgatcctaagcgtaaaggtggtaaggcaactggcgtacgtccaatggttaaa
ctgttggatgagcgtggtggcgaagttaaaatggcgggtactgataccaccgttatgatc
ggtttccaggtgggttgtattatcacggtgaaagatggccaagtggttggtgtgggtgat
gtactggcacgtattccacaagaatctgccaagactcgcgatattaccgggggtctgcca
cgcgttgctgagttgtttgaagcgcgtattccgaaagatccgggtatgctggctgaaatt
accggtacagtttccttcggtaaagaaaccaagggtaaacagcgtttagtcttaacagat
ctggaaggtgcaccgcacgaatacctgatcttgaaagaaaaacacgtactggttcacgat
ggtcaggttgttaaccgtggtgaaagtattgtcgacggcgcgattgatccgcacgacatc
ttgcgtttgcaaggtatcgaagcgttgtcccgctatgttgtacaagaagtgcaggaagtt
tatcgtctgcaaggtgtgaagattaacgataagcacattgaagtaattcttcgacaaatg
ttgcgtcgtgttgtgattactgattctgccgattctgctttcatccagggtgagcaagtt
gagcgtgctgaagtacttactgtgaatgataagttgattgctgagggtaagttaccagca
agctacgataatgttctgttaggtattactaaagcatctctgtctacagattcgtttatt
tcagcggcttccttccaggaaaccacgcgggtgctgactgaagcagccatcatgggcaaa
attgatgacttgcgtggcctgaaagaaaacgtgatcgtcggccgcttgattccggcaggt
actggtttagcttaccaccgtagccgtaagcgtcaggcacctgttgtagatcaattgtct
gatatttttgcaccaactgcagaggctgaaaccgctgtaagtggtgaagtcggggcctaa
DBGET
integrated database retrieval system
