Iodobacter ciconiae: EJO50_16275
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Entry
EJO50_16275 CDS
T05767
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
iod
Iodobacter ciconiae
Pathway
iod02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EJO50_16275 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iod03021
]
EJO50_16275 (rpoD)
Transcription machinery [BR:
iod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EJO50_16275 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
AZN37886
UniProt:
A0A3S8ZWN2
LinkDB
All DBs
Position
3697658..3699610
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AA seq
650 aa
AA seq
DB search
MAADQEIDNDDQARTDFREVNRPSAEQKADPEQRKAKFKTLIVLGKERGYLTYAEINDHL
PDDMLDAEQIEGIISMISNMGIQVYDEAPDAEDLLMSDAAPSVPDEDAAEEAEAALSSVD
AEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMIQAISACPTTVAYILGLV
EKGLADEIRIDDVIDGFIDPNADENTPPPIEVIEAEAEDADDAVDEEDGEEDDGSAAAKA
NLELLKVQVREHFDIVREHFDKMIKALAKEGAHGKSYLEHQQAIAGIFLITRFSARQVES
LCDQLRGMVDEIRSCEREIMDICTVRVKMPRDHFIKTFPGRETDTAWVVDEINYGHKYSA
ILARYQHAIMEKQQTLAQLQVNAMIQIKDLKEINRQMSTGEAKARRAKREMIEANLRLVI
SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
TIRIPVHMIETINKMNRIQRQILQETGIEPTPDELADKMEMPEDKIRKILKIAKEPISME
TPIGDDDDSHLGDFIEDSNNLAPAEAAIYAGLREATKEVLDTLTPREAKVLRMRFGIDMN
TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLKSFVESQASEG
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagatcaagaaatcgacaacgacgaccaagcgcggactgatttccgtgaggtc
aatcggccatctgctgagcagaaggccgaccccgaacaacgtaaagcgaagtttaaaacg
ctgatcgtgctcggtaaggagcgcggctatctaacctacgccgagatcaacgaccacctg
ccagatgacatgctggatgccgagcaaatcgaaggcatcatcagcatgatcagcaatatg
ggcattcaggtgtacgacgaagcaccggacgcagaagacctgcttatgtccgatgcggcg
ccgtccgtacctgatgaagacgctgctgaagaagctgaagctgctctatcttccgttgac
gcagagtttggtcgtactaccgatccggtgcgcatgtatatgcgtgaaatggggacggta
gagctcttaacccgcgaaggcgaaattgaaatcgccaagcggattgaggatggtcttaag
cacatgatccaggcgatctcagcctgcccgactaccgttgcctatattctgggcctggta
gaaaaaggcttggctgacgagattcgcattgatgatgtgattgatggctttatcgaccct
aacgcagacgaaaacaccccaccgccaatcgaagtgattgaagcggaagccgaggatgca
gacgatgcggtagacgaggaagacggcgaagaagatgacggcagtgcagccgctaaagct
aatcttgaactgttaaaagttcaggtgcgcgagcattttgacatcgtgcgcgagcacttt
gacaaaatgatcaaagcgctggctaaagaaggcgcacatggcaaaagttatctggaacat
cagcaggccattgctggcatttttctgattacccgcttctctgcccgccaggttgaatcg
ctttgcgatcaactgcgtggcatggtggatgaaatccgcagctgcgagcgtgaaatcatg
gacatctgtactgtccgggtaaaaatgccgcgcgatcactttatcaaaaccttccctggc
cgtgaaacagatacggcgtgggtagtggatgagatcaactacggtcataagtattccgcc
attcttgcgcgctaccagcacgccattatggaaaagcaacaaactctggctcagttgcaa
gttaacgcaatgattcagattaaggacctcaaggaaatcaaccgtcagatgtcgacgggt
gaagccaaggcccgccgcgccaagcgcgaaatgattgaagctaacttgcgtctggttatt
tcgattgctaagaaatacaccaaccgtggtttgcagttccttgacctgattcaggaaggc
aatatcggcctgatgaaagcggtagataagtttgaatatcgccgtggttacaagttttcg
acttacgcaacatggtggattcgccaggcgattacccgttcgattgccgatcaggcccgt
accattcgtattccggtacacatgatcgaaacaatcaacaagatgaaccgtattcaacgg
caaatcttgcaggaaaccggtattgagccgactcctgacgagcttgcagataaaatggaa
atgccggaagacaagatccgcaaaatccttaagatcgcaaaagagccgatctcgatggaa
acgccgatcggtgacgacgacgattcccatttgggtgatttcatcgaagactcaaacaat
ctggctcctgctgaagccgctatctacgcaggcttgcgtgaagcgaccaaggaagtgctg
gataccctgacaccgcgtgaagccaaggtgctgcgtatgcgctttggtattgatatgaat
accgatcacacgctggaagaagtgggtaagcagtttgatgttacgcgcgagcgtattcgt
cagatcgaagccaaggctttacgtaagcttcgccacccgactcgttcagaaagactgaaa
agttttgttgaaagtcaggccagtgaaggttaa
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