Iodobacter ciconiae: EJO50_16640
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Entry
EJO50_16640 CDS
T05767
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
iod
Iodobacter ciconiae
Pathway
iod03030
DNA replication
iod03430
Mismatch repair
iod03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJO50_16640 (holB)
03430 Mismatch repair
EJO50_16640 (holB)
03440 Homologous recombination
EJO50_16640 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iod03032
]
EJO50_16640 (holB)
03400 DNA repair and recombination proteins [BR:
iod03400
]
EJO50_16640 (holB)
Enzymes [BR:
iod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EJO50_16640 (holB)
DNA replication proteins [BR:
iod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EJO50_16640 (holB)
DNA repair and recombination proteins [BR:
iod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EJO50_16640 (holB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
nSTAND3
Sigma54_activat
AAA_5
Sigma54_activ_2
Motif
Other DBs
NCBI-ProteinID:
AZN37950
UniProt:
A0A3S8ZWS5
LinkDB
All DBs
Position
3773685..3774716
Genome browser
AA seq
343 aa
AA seq
DB search
MSATMKTLYPWQAAPWSQLMREIDRLPHALLITGEEGIGKRRFAEYLAQLLLCEDTAKTT
MPCGVCDGCRWFLAGNHLDFRLVSPGEADAEASEDAKPKRKSQVIGVDDIRDLADFVNLT
AHRKGIRVTLVHPAEALNIAAANAFLKTLEEPPAGAVFILVSNHWRRLLPTIRSRCRVFP
MAMPDQTAATGWLAQQQVVNPSLHLAHTGGAPLAALDDASAEWLPNRKAFLEHIANPVVL
DVLAVAAELEKAKLEMSLVVSWLQKWVHDLISIKMTGKLRYYPDWDSDLRRIATQSPAFF
HYIDRLNEAMRLAHHPLNQRLVFESLLFAYLDALRGKSSRGRK
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccacgatgaaaacactttacccttggcaagcagcgccctggtcacaattgatg
cgcgaaattgatcgcttgccacatgccttactgattacaggagaggaaggaatagggaag
cggcgttttgctgaatatctggctcagctattattatgtgaagatactgcaaaaacgacg
atgccatgcggagtatgtgatggctgccgctggtttttggcaggaaatcatctcgatttt
cgtttggtttcccctggcgaggccgatgctgaggcgagtgaagacgccaaacctaagcgt
aaatcacaggttattggcgttgatgatattcgtgatctggctgattttgtgaatctaacg
gcacatcgaaagggtattcgcgttactttggtgcatccggcagaagctctgaatattgct
gctgcgaatgcttttttaaaaacactggaagagccaccggctggtgccgtgtttatcctg
gtttcaaatcactggcggcgtttgttacctaccatccgcagccgttgccgcgtgtttcct
atggcaatgccagatcaaacagcggcgacgggctggttagcccagcagcaggtggttaat
ccctctttgcatctggcccataccggcggtgcgcctttggccgctctggacgatgcgagt
gccgaatggctgcccaatcgaaaagcatttttagagcatattgctaaccctgttgtttta
gatgtgctggcggtggccgcagagttggaaaaagctaaactggagatgtctttggtggtg
agctggttacaaaaatgggtacacgatttaatcagtataaaaatgactggcaaacttcgc
tattatcctgattgggatagcgatttacgccgtatcgcaacacagtcgcccgcatttttt
cattatatcgatcgtttgaatgaggccatgcgcctggcgcatcatcccttaaatcaacgt
ttggtatttgaatctttattgtttgcttatttagatgcattgcgtggcaaaagtagcaga
ggaagaaaatga
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