Isosphaera pallida: Isop_1104
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Entry
Isop_1104 CDS
T01407
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ipa
Isosphaera pallida
Pathway
ipa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Isop_1104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipa03019
]
Isop_1104
03009 Ribosome biogenesis [BR:
ipa03009
]
Isop_1104
Enzymes [BR:
ipa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Isop_1104
Messenger RNA biogenesis [BR:
ipa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Isop_1104
Ribosome biogenesis [BR:
ipa03009
]
Prokaryotic type
rRNA processing factors
Isop_1104
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Radical_SAM
Motif
Other DBs
NCBI-ProteinID:
ADV61692
UniProt:
E8R4U6
LinkDB
All DBs
Position
complement(1590480..1594901)
Genome browser
AA seq
1473 aa
AA seq
DB search
MMTMKKKEMLINVLQSEECRIAVVENGVLEELYVERASHENYTGNIYKGRVVNIEPGFQA
AFVDFSVGRNGFLHVSDVDPQYFQPRGGSTSASLVADESGEESDPLASPATPRPARGRDR
DRDLRRGRDRGRGERPDRMDRSRYRRRPFPSRPQEPRVFGEGLTGESGPLTPLSGSEPFG
TTSQAPLPTSPPRPAAEHGVISSLPSTTTPEPAAPSQPAPSSFGRGLVQETSPAAHQERV
ETRSNDLAEDRFGAESLRPRPSRDRGEWVRSRNWTRSEPRPVTEPTDFDASEGDVVEHPP
SVATTPRPARETEDPLYETADLGLELPPNRNPRHREALLAEPSALQAPENRNPTASDVPE
NTSPPPSAVEDPFEAEFDRTPARRRDRGRSRPSLKDKARPLPPTSASVPTSPIEAAHEET
VGPTSTPSRRTDRPGDLGSRSRPTTAPSTTPVSSVYPHANRDLFAGDEDDIDLELAEELE
AIQETAVPEAFDEAVAFDNRAEPRELPTSLRGRQAIRARGGDRPAPHPTAPIPPLPPPKL
RDRDIGSQTPSATSPPAIPPAITPSTRARSLSPAPPRPLRPAAPPIPHGRAGEPGYVPRR
ERTRLALTAITPFDTETEAQTTMEPRRDVAGFEPTLEPPASRRSLARPEPTPGHHPASRR
GQVKPEREDQFDVDSEATIEPEERIETDLGLDPLVTAPGSESETDSAGRRRRRRRRRSRR
RDRGIETVSQPRRSMTEDAEFDDLPTDLDEPDGEFEEELESPAPAQSPVRSEREEVQSAH
PSTTRERLPEPPFDTGGEREPAAETRRRLRERPAVDLGPLYKHRVERERSVDRPRARTEF
GGDLIEEESPPQTPAPREPRGRGHRAMPSLPAPASPSRPTDRHDDEFAHPEDLDSLDDLH
DDLEEFEDEDEELEDLDEAELEDFEGLSEDDDDHDQEVEDQDHVEVEVDEERRSALARRP
VDPEDEIDPELQEEIRREIEEIAVLEAEMGLRGPDGRYKRGEDRAGTVIPGSRTRGVVRP
PIQEIFRRGDEVIVQVIKESIGNKGPTLSTYISIPGRYLVLMPGLNRVGVSRKINDEAQR
RKLKEIMEELNPPNNLGFIVRTAGVDRTKKELARDMAYLLRLWKAILRRIKRTQAPAVIY
QESDMITRTIRDVFSDDIDTIWIDERQAYEHAREFLQNVMPRYVDRLKLYEGKTPLFHLY
GLEEEIQRIHRKHVPLPGGGSIIIEPTEALVAIDVNSGNFRVENDAEKTAYETNLRAAKE
IARQLRLRDLGGVIINDFIDMREEKHRRGVERALREAIKRDRARTKVLRMSQFGIIEMTR
QRIRPSLKRSVYQDCPHCQGTGLIKTPESLSIEVMRLLALAAHRPEVRRLVLTVSTPTAE
YLANKKRKEIAQLEIEGNLTIEIRATDVGPGDQLKLECFDQNGVELRSLIPGGPSPVTSG
AGYSSGLAALPTPPAGTGYGSHGVGSSSRRSGY
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgatgaaaaagaaagaaatgctcatcaacgtcctccaatcggaggagtgccga
atcgccgtggtggaaaacggcgttctcgaagagctttacgtcgaacgggccagtcacgag
aactatacgggcaacatctataaaggccgggtggtgaacatcgaacctggctttcaggcc
gcgttcgtcgatttctcggtgggtcgcaacggcttcctgcatgtttcggacgtcgatccc
caatacttccaaccgcgcggcggctcgaccagcgcgagcttagtcgccgatgagtccggt
gaggaaagcgatccgcttgcctcgcctgccactccgcggccggcgcggggccgggatcgg
gaccgcgatctccgaaggggccgggatcggggacgtggcgaacgccccgaccggatggac
cgcagtcggtatcgtcgtcgtccttttccgtcccgtccccaagagccccgcgtcttcggg
gaaggactcaccggcgaatccgggccgttgacgccgttgagtggctcggagccgtttggt
acgacctcccaagcccccctccccacatcgccgccccgccccgccgccgaacacggcgtc
atctcgtccctgccatcgaccaccacgccggaacccgccgccccgtcccagcccgctcca
agcagctttggtcggggattggttcaagagacctcccccgcagcgcatcaggagcgggtc
gaaacccgctcgaatgatttggctgaggatcgttttggagccgaatcactccgtcctcgg
ccaagtcgagaccgcggcgaatgggttcgctcacgcaattggacccgttcggagccccga
cccgtcaccgaaccgaccgacttcgacgccagcgaaggcgacgtggttgaacacccccca
tccgtggcgacgactccaagacccgctcgggagactgaggacccgctgtacgagaccgcc
gatcttggcttggagttgccacccaatcgcaacccgcgccatcgcgaagcgctcctcgcc
gaaccatcggccctccaggctcctgagaatcgaaaccccactgccagcgatgtccccgag
aatacgtctccgccgccgtcggccgtcgaggatccgttcgaggccgagttcgatcgaact
cccgcgcgtcgtcgggatcgtggtcgaagccgtccttccttgaaggacaaggcgcgtcca
ctcccaccgacctcagcaagcgtgccaacctctccaatcgaagcggcccatgaagaaacc
gtcggccccacctccacgccttcgcgtcggacggaccgtcctggcgatctcggctcccga
tcccgccctaccacagccccttccacgaccccggtttcctcagtttatcctcacgccaac
cgcgacctgttcgcgggcgatgaggacgacatcgacttggagttggccgaagaactcgaa
gccattcaagagaccgcggtgccggaggcgttcgacgaggccgtggcgtttgacaatcgc
gccgaaccgcgcgagcttcccacgagtctccgcggacgccaagctattcgcgcccgtgga
ggcgatcgtcccgcgccacacccaaccgctcccattcctccgcttccgccgcccaagctg
cgcgaccgtgacattggatcccaaacgccgtcggcgaccagccctccggccattcctccc
gccatcaccccatcgacgcgcgcccgctccctctcgcccgccccgccccgcccgctgcga
ccagccgcccccccgattcctcatggccgggccggtgagcccggatacgtgcctcgtcgc
gaacggacccggttggctttaaccgccatcacgcccttcgacaccgaaacggaagcccag
accaccatggaacccaggcgcgatgtcgccgggttcgaaccgaccttggaacctcccgcg
tctcgccgctccttggcacgccccgaacccactcccggccatcacccagcttcacgtcga
ggccaagtcaaaccagagcgagaggaccagttcgatgtggacagcgaagccaccatcgaa
ccagaggaacggatcgaaaccgatcttgggctcgatcccctcgtgaccgcgccgggttcg
gaaagcgagaccgactccgccgggcgtcgtcgtcgtcgccgccgccgtcgcagccgccgc
cgcgaccggggaatcgaaaccgtttcccaaccgcgtcgctccatgaccgaagacgccgag
ttcgacgacctgcccaccgacctcgacgaaccggacggcgagttcgaagaggaactcgaa
tcgcccgctccagcgcaaagtcccgtgcggagcgaacgcgaagaagttcaatccgctcac
ccttcgaccactcgggaacgactgcctgagccacccttcgacacaggaggcgagcgggaa
ccggccgccgaaacgcgaaggcgattgcgagaacgacccgccgttgatctcggccccctg
tataaacatcgcgttgaacgggaacgatcggtggatcgtcctcgcgcgcgaaccgagttc
ggcggcgatctgatcgaagaggagtctcccccccaaacacccgcgccacgcgaaccccgc
ggtcgcggccaccgggccatgccctccctcccagctcccgcttccccctcacgtccaacc
gatcgccacgacgacgagttcgcccaccccgaggatctcgactccctcgacgatcttcac
gacgacctggaggagtttgaagacgaagacgaggagttagaggatctggacgaggccgag
ttggaggacttcgagggcctctccgaggacgacgacgaccacgaccaagaggtggaggat
caagaccacgtcgaggtcgaggtcgatgaggaacgtcgttcggcgctggcccgccgtccg
gtggatcccgaggacgaaatcgatcccgaacttcaggaggaaatccgccgcgagattgag
gagatcgccgtacttgaggccgaaatgggtctacgcggacccgacggacgctacaaacgc
ggcgaggatcgcgcagggaccgtcatccccggctcgcgcacccgtggcgtggtccgtccg
cccattcaagaaattttccgtcgaggcgacgaggtgatcgtccaggtcatcaaggaaagc
atcggcaacaaggggcccaccctttccacttacatcagcatccccggacgttatttagtg
ttgatgccgggtctcaaccgggtgggcgtctcgcgcaagatcaacgatgaagcccaacgt
cgcaaactcaaggagatcatggaggagctcaatccgcccaacaatctcggcttcatcgtc
agaaccgccggggtcgatcggaccaagaaggaactggcccgtgacatggcctatttgttg
agactctggaaggcaatccttcggcggatcaagcggactcaagcgccggcggtgatctat
caggaatccgatatgatcacgcgcacgatccgcgacgtgttctccgacgacatcgacacg
atctggatcgacgagcgccaggcgtatgaacatgctcgcgaatttcttcagaacgtcatg
ccacggtacgtggatcggctcaagctctacgagggcaagaccccgctcttccacctttac
gggttggaggaggaaatccagcggattcaccgcaagcacgtcccgttgcccggtggcggc
tcgatcatcatcgaaccgaccgaagcgctagtggccatcgacgtcaactcgggcaacttc
cgggtcgaaaacgacgccgagaagaccgcttacgaaaccaacctgcgggccgccaaggag
atcgcccggcaacttcggctacgcgacctgggcggcgtgatcatcaacgacttcatcgac
atgcgcgaggaaaagcaccgccggggagtcgagcgggcgctgcgggaggcgatcaaacgc
gatcgagcgcggaccaaggtcctgcggatgagccagtttgggatcatcgagatgacccgt
cagcgcatccgtcccagtttgaagcggtcggtctatcaggattgtccccactgccagggg
accggtctgatcaagacccccgagagcctctcgatcgaggtgatgcgactgctcgccctg
gcggcgcatcgtcccgaggtgcgtcgcttggtgttgacggtttcgacccccaccgccgaa
tacctggccaacaagaaacgcaaggagattgcccaactcgaaatcgagggcaacctaacg
atcgagattcgcgccaccgacgtgggtccaggcgatcagctgaagctggaatgcttcgat
caaaatggggtcgaactgcgttccctcatcccgggaggaccttcgccggtgacgagtggc
gcggggtacagcagcgggcttgccgcgttgccaaccccgcccgccggaaccggttatggt
tcccacggggtcgggtcatcctcccgccgcagcggttattga
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