Isosphaera pallida: Isop_1352
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Entry
Isop_1352 CDS
T01407
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ipa
Isosphaera pallida
Pathway
ipa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Isop_1352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipa03400
]
Isop_1352
Enzymes [BR:
ipa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Isop_1352
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Isop_1352
DNA repair and recombination proteins [BR:
ipa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Isop_1352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
zf-FPG_IleRS
Auto_anti-p27
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
ADV61937
UniProt:
E8QX96
LinkDB
All DBs
Position
complement(1947120..1947986)
Genome browser
AA seq
288 aa
AA seq
DB search
MPELPEVETMARGLRPTLTGAKLGQVEVIDPKLLEGSGMSADRFVERVSESVVSHVGRRG
KWLVWTLAGQRGLVVIQPRMTGGFWLIEPDRPHHVRILFPLPELGKTVWLTDARRLGRVL
WFADQTQASAAFARSHGPDALEIERDDLAARLARTARGLKPTLMDQKVLAGIGNIYADEI
CFAARIHPEIPANTLSARQVDRLHAAISAILLRAIQAEGSSFDAGYRTVLGLEGGFLAEN
AMYGRGGQPCPGCGEPILKTRIAGLIGRPTYFCPICQPPPVPQTMRQR
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcccgaagtcgaaacgatggcgcgagggcttcgcccgaccctgaccggg
gcgaagctggggcaggtcgaagtgatcgaccccaaactgttggaggggtcggggatgtcg
gccgatcggttcgtcgagcgtgtctcagagtcggtggtgtcccacgtgggtcgtcgcggc
aaatggctggtctggacgctcgctgggcaacgtggtttggtggtgatccagccccggatg
acggggggcttctggttgattgaaccggatcgtccccaccatgtccgaatcctcttcccc
ttgcccgaactcggcaagacggtgtggctgaccgacgcccgacgattgggccgggtcttg
tggttcgccgatcagacccaggcgagcgctgccttcgcccgctcccacggacccgacgcc
ttggagattgaacgcgatgacctggccgctcgtctagcacggactgccagaggccttaaa
cccaccttgatggaccagaaagtcttggccggcatcggcaacatctacgccgatgaaatc
tgtttcgccgcccggattcaccccgagatccccgccaacacactcagtgctcgtcaagtc
gatcggttgcacgcggcgatttccgccattctgctgcgcgcgattcaggccgaggggtcc
agtttcgacgccggttatcgaactgtgctgggtttggaggggggattcctcgccgaaaat
gccatgtacggccgaggcggtcaaccttgtcctggttgtggtgagccaattctcaagacc
cggatcgctggtttgatcggtcggcccacctatttctgccccatctgccaaccgcccccc
gtccctcaaactatgcgccaacggtga
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