Isosphaera pallida: Isop_2582
Help
Entry
Isop_2582 CDS
T01407
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ipa
Isosphaera pallida
Pathway
ipa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Isop_2582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipa03021
]
Isop_2582
03019 Messenger RNA biogenesis [BR:
ipa03019
]
Isop_2582
Transcription machinery [BR:
ipa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Isop_2582
Messenger RNA biogenesis [BR:
ipa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Isop_2582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
ADV63153
UniProt:
E8QZ11
LinkDB
All DBs
Position
3740448..3742433
Genome browser
AA seq
661 aa
AA seq
DB search
MTQSNPIRPRSRLGGSVACSTGDGVASPSRAVVSSPSIHSSSPTPSPTMNRIDESPESVS
HPSSPASSSNGASPRTASVSSRAPREGGSIRSHMNRDRSRDKDKDKDTAVPVPAKPIARG
KVKGKSAAVAVDEQASTDEPITPTKRATASSSAGPLSRRRTAAAAPAPSLEEDDLDDLET
PSARLNPEPDYDDLDDDEDEEFEEEEAIGRLDDDRVTDDEQIDPDLFGDHALNNRYEDIK
RGEIHLTELQRMSMAQLIRAAKAEGVTEIVGLKKQDLIFKILKERVKQNGLMYGEGTLEV
LPDGFGFLRSPDYHYLPCPDDIYVSPSQIRRFGLKTGAIVSGQIRPPKENERYFALLRVE
AINYDTPDQLSEKVGFDDLTPLHPQGRLRLETTPDEISMRVVDLITPIGKGQRGLIVAPP
RTGKTILLQKIANSILKNHPECYVMVLLIDERPEEVTEMERSVRGDHTEVVSSTFDEPTA
RHLQVAEMVIEKAKRMVEYGKDVVILLDSITRLARAYNAEAPNTGKILSGGIDASALQKP
KRFFGAARKIEEGGSLTILATALVDTDSKMDNVIFEEFKGTGNMELHLDRKLVERRIWPA
INVSASGTRREELLMDAEELQRVWLLRRVLNDMPAHEAMEFITGRMKKTKTNAEFLATTN
F
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaatccaacccgatccgaccccgttcccgcttgggcgggagcgtcgcgtgttcc
acgggtgacggcgtcgcgtcgccttcccgagcggttgtttcctccccgtccatccattcc
tcgtctccaacaccttcgcccaccatgaatcggatcgacgaatcccccgaatccgtctcc
catccgtcttcccccgcctcctcgtccaacggcgcctcgcctcgaaccgcgtcggtttcg
tcgcgtgcgccccgcgagggaggcagcattcgaagccatatgaaccgagaccgatcccgc
gacaaagacaaggataaggacaccgccgttcccgttccggccaaaccaattgcgcgaggc
aaggtgaagggcaaatcggccgccgtcgccgtcgatgaacaagcctcgaccgacgaaccg
atcacgccaaccaagagagccacggcctcctcctcagcgggtcccttgagccgtcgtcga
accgccgcggccgctcctgcgccgtcgctggaggaagacgatctggacgatctagaaacc
ccctccgcccgcctcaatcccgagcccgactacgacgacctcgacgacgacgaggacgag
gagttcgaagaggaggaggcaatcggccgcctcgacgacgaccgggtgactgacgacgag
cagatcgacccggatctcttcggcgatcacgcgctcaataatcgctacgaggacatcaag
cgcggtgagatccatctcacggaacttcagcggatgagcatggctcagctaatccgcgcg
gccaaggccgagggagtcaccgagatcgttggcttgaagaaacaggacctgatcttcaaa
atcctcaaggaacgggtcaagcaaaatggcctgatgtacggcgagggcaccctggaggtc
ctgcccgacggctttggtttcctccgcagcccggattaccattacctcccctgccccgac
gacatctacgtctcgcctagccagattcgccgcttcgggctcaagactggggcgatcgtc
tccggccaaatccgcccacccaaggagaacgagcgttacttcgccttgctacgggtcgag
gcgatcaactacgacacccctgaccaactctccgagaaagtcgggttcgatgaccttacc
ccacttcatccccagggacgcttgcgcctggaaaccactcccgacgaaatcagcatgagg
gtggttgatctgatcacgccgatcggcaaaggtcagcgtggcctgatcgtcgctccgccc
cgcactggcaaaaccatcctgctccagaaaatcgccaacagcatcctcaaaaaccatccc
gaatgctatgtgatggtgctgctcatcgacgagcggcctgaagaagtcaccgaaatggag
cgcagcgtgcgcggcgaccacaccgaggtcgtcagttccaccttcgacgaaccgaccgcg
cggcaccttcaggtcgccgaaatggtgatcgagaaggccaaacgtatggtcgaatacggc
aaggatgtggtgattttgctcgactcgattacccgattggctcgcgcgtacaacgccgag
gctcccaataccggcaaaatcctctctggcggtatcgacgcctcggcacttcaaaagccc
aagcgcttcttcggcgcggcccgcaagatcgaggagggcggcagcctcaccattctggcc
accgcgctagtggacaccgacagcaaaatggacaacgtcattttcgaggagtttaaaggg
accggcaacatggagttgcacctggaccgcaaactcgtcgaacgacggatctggcctgcg
atcaatgtctcggcctcgggcacccgtcgcgaggagttgctgatggacgctgaggagttg
caacgggtttggttactgcgacgggttctcaatgacatgccagcccacgaggcgatggag
ttcatcaccggacgcatgaagaagaccaaaaccaacgccgagtttctggccaccaccaac
ttctga
DBGET
integrated database retrieval system
