Isosphaera pallida: Isop_2995
Help
Entry
Isop_2995 CDS
T01407
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
ipa
Isosphaera pallida
Pathway
ipa02020
Two-component system
ipa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Isop_2995
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Isop_2995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipa03021
]
Isop_2995
Transcription machinery [BR:
ipa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Isop_2995
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
LacI
HTH_Tnp_ISL3
HTH_23
MarR
Motif
Other DBs
NCBI-ProteinID:
ADV63560
UniProt:
E8R2R3
LinkDB
All DBs
Position
4365759..4367255
Genome browser
AA seq
498 aa
AA seq
DB search
MRLDTSMRPDVTLRQTLMPRMIQSMEILQLPSLALQERIDRELIENPLLVDLRESGETAA
STGESDGDEPSELRKIDPEVDSPTATANLEPTPPTTDEFDFATEFPEFADLEPWERESKS
RATLAEESDRKLEAMQNMASRPPSLVDDLSLQLGYLDLEPTLRRACDYIIANLDDHGFFR
LPLEDVVRDVPGLDLEMAREALRVVQKLDPPGIAARDLKECLLLQITPETRHADLVATLI
RHHLDDIGHNRLPIIERKTGAPLERIKEAIEQLRKFNPRPASGFTSGDQAYIVPDLIVEQ
NEQGRWVVRLDDSQTPRLGISPRYQSMLKNKQADAVTREYIKYKIDSARWLIDSIEQRKA
TLLKVAQAIIDYQTPFLNHGPEHIQPLKMQQIADQVGVHVTTVSRAVDDKWIQTPRGLLP
LKRFFGGGTRTSSGEEVAYDQLRLRLQEMIAQEDKRKPLSDEEIVKAFEKEGITLARRTV
TKYRETLGIPSSRQRRVY
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgagactcgacacatcgatgcgtccggacgtgacgttacgtcagacgctcatgccccgc
atgattcagtcgatggagattctccaactgccgtcattggcgcttcaggagcggatcgat
cgggaactgatcgaaaacccgttgctcgtcgatctccgcgagagcggcgagaccgccgcc
tcgaccggcgagtccgacggcgacgaaccgagcgaacttcggaaaatcgaccccgaagtg
gactcccccaccgcgacggccaacctcgaacccacccccccaaccaccgacgagttcgac
ttcgccaccgagtttcccgagttcgccgacctggaaccctgggaacgcgagagcaaaagc
cgcgcgaccctcgcggaggaatccgaccgcaaactcgaggcgatgcaaaacatggcctct
cgtcccccctcgctggtggacgacttgagcctgcaactaggctacctcgacctcgaaccg
acccttcgtcgcgcttgcgactacatcattgccaacctagacgatcatgggtttttccga
ctccccctggaggatgtggtccgcgacgtgcccggcctcgacctcgaaatggcccgcgag
gcgctgagggtggtccagaaactcgacccgcccggcatcgccgcccgcgacctcaaagaa
tgcctcctgctccagatcactcccgagacccgccacgccgacctcgtggctaccctgatt
cgccaccacctcgacgacatcggccataatcgcctgccgatcatcgaacgcaaaaccggt
gcgcctctagaacgaatcaaggaggcgatcgaacaactccgcaagttcaacccccgcccc
gcttccggctttacctctggcgaccaggcctacatcgttcctgacctgatcgtggaacaa
aacgaacaaggtcggtgggtggtgcgcctggacgattcccaaacgccccgtttgggaatc
tccccacgatatcagagcatgctcaaaaacaagcaagccgatgcggtcacacgcgaatat
atcaaatacaaaattgactcggcccggtggctgatcgattcgatcgagcagcgcaaggcc
accctactcaaggtggctcaggcgatcatcgactatcagacgcccttcctcaaccacggt
cccgaacacattcaaccgctcaagatgcagcaaatcgccgatcaggttggggttcacgtt
accacggtcagccgtgcggtggatgacaagtggattcaaaccccccgtggtttgctgccg
ctcaagcgtttcttcggcggaggcacccgcacctccagcggcgaggaggtcgcttacgac
caattgcgcctgcgtcttcaggagatgatcgcccaggaggacaagcgcaaacccctctct
gacgaggagatcgtcaaggcctttgagaaggaggggatcactttggcgcgccgaaccgtc
accaagtaccgcgagaccctgggcattccctccagtcgccagcggcgcgtttactga
DBGET
integrated database retrieval system
